All File Changes

v387_preview2 to v387_base (2019-08-26 to 2019-09-02) v387

• confs/hgwdev.hg.conf
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    84b51ea5d7fd119b456db91df7010e9a60071f17 Sun Sep 1 01:11:37 2019 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 1, context: html, text, full: html, text
    84b51ea5d7fd119b456db91df7010e9a60071f17 Sun Sep 1 01:11:37 2019 -0700
    Installing updated hg.conf files from UCSC servers
• src/hca/fromGeo/geoToHcaStorm/geoToHcaStorm.c
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    5eb59079a1862c7bb7d63f297648b13ba0e5b6be Sat Aug 17 11:00:34 2019 -0700
    FIxed little bit I missed on converting sample.characteristics_ tags to lab. tags: the built in renames on sex and age.
• src/hca/fromGeo/geoToTagStorm/geoToTagStorm.c
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    45ac6063a2920f00c4913f32906d76b498daff78 Fri Aug 16 00:37:01 2019 -0700
    Improving comment.
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    e2820f9c1b5ef501c3ee94baffdbc4e4b5aa1726 Fri Aug 16 13:33:54 2019 -0700
    Making a short lab. tag that echos values of the sample_characteristics_ tag
  • lines changed 13, context: html, text, full: html, text
    cceca97806d67aa66ce6523c7a7e503abaf9f1da Sat Aug 17 11:04:02 2019 -0700
    Fixing a bug I'd introduced causing bad output because of escapedVal being calculated in the wrong places. The fix is a bit verbose but works. May simplify later.
  • lines changed 21, context: html, text, full: html, text
    fed41db46422f466d0154ad34b26db6a81618730 Sat Aug 17 11:17:00 2019 -0700
    Removing the now unneeded sample.characteristics_ tags since have updated all the toHca specs to use the lab. tags instead.
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    1c2d4a166f57613d6b0c69921158209cef5a0078 Fri Aug 23 20:32:02 2019 -0700
    Improving strip_unprintables, which was letting parens slip through.
• src/hca/hcat/mysite/hcat/__init__.py
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    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/admin.py
  • lines changed 92, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
  • lines changed 25, context: html, text, full: html, text
    d94cabb7a504e0dcc206214278e0e4d270f94664 Thu Aug 29 18:50:36 2019 -0700
    Adding assay section and tightening up short_names to be unique.
  • lines changed 62, context: html, text, full: html, text
    bd66fde8159a3069c11b602c6c62205db07ebf9b Fri Aug 30 13:51:30 2019 -0700
    Renaming less interesting tables to begin with 'vocab' so as to unbury project table. Adding comments and project origins fields.
  • lines changed 83, context: html, text, full: html, text
    067c78eb755bc60a7dceba8da0e58df055f48810 Sat Aug 31 10:17:20 2019 -0700
    Changing Vocab tables to no longer need the prefix, but to be distinguished by 'wrangler' as a prefix in the verbose_name. Adding a bunch of fields to the wrangler part of the project and rearranging that page.
  • lines changed 34, context: html, text, full: html, text
    6cd30cb2f076610cff220d4dcc20f5c5d44f7bc0 Sat Aug 31 18:24:50 2019 -0700
    Updating to v 0.4. See version.txt for details. Should be a pure python commit except for version.txt.
• src/hca/hcat/mysite/hcat/apps.py
  • lines changed 5, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0001_initial.py
  • lines changed 77, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0002_auto_20190829_0853.py
  • lines changed 44, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0003_auto_20190829_1841.py
  • lines changed 49, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0004_auto_20190829_1844.py
  • lines changed 15, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0005_auto_20190829_1856.py
  • lines changed 24, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0006_auto_20190829_1204.py
  • lines changed 24, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0007_auto_20190829_1220.py
  • lines changed 27, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0008_auto_20190829_1233.py
  • lines changed 33, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0009_auto_20190829_1308.py
  • lines changed 20, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0010_auto_20190829_1323.py
  • lines changed 22, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0011_auto_20190829_1332.py
  • lines changed 19, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0012_auto_20190829_1348.py
  • lines changed 67, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0013_auto_20190829_1416.py
  • lines changed 17, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0014_auto_20190829_1420.py
  • lines changed 31, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0015_auto_20190829_1438.py
  • lines changed 18, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0016_auto_20190829_1505.py
  • lines changed 26, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0017_auto_20190829_1506.py
  • lines changed 23, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0018_auto_20190829_1518.py
  • lines changed 23, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0019_auto_20190829_1540.py
  • lines changed 17, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0020_auto_20190829_1542.py
  • lines changed 18, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/0021_auto_20190829_1544.py
  • lines changed 22, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/migrations/__init__.py
  • lines changed 0, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/models.py
  • lines changed 103, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
  • lines changed 33, context: html, text, full: html, text
    d94cabb7a504e0dcc206214278e0e4d270f94664 Thu Aug 29 18:50:36 2019 -0700
    Adding assay section and tightening up short_names to be unique.
  • lines changed 76, context: html, text, full: html, text
    bd66fde8159a3069c11b602c6c62205db07ebf9b Fri Aug 30 13:51:30 2019 -0700
    Renaming less interesting tables to begin with 'vocab' so as to unbury project table. Adding comments and project origins fields.
  • lines changed 114, context: html, text, full: html, text
    067c78eb755bc60a7dceba8da0e58df055f48810 Sat Aug 31 10:17:20 2019 -0700
    Changing Vocab tables to no longer need the prefix, but to be distinguished by 'wrangler' as a prefix in the verbose_name. Adding a bunch of fields to the wrangler part of the project and rearranging that page.
  • lines changed 22, context: html, text, full: html, text
    6cd30cb2f076610cff220d4dcc20f5c5d44f7bc0 Sat Aug 31 18:24:50 2019 -0700
    Updating to v 0.4. See version.txt for details. Should be a pure python commit except for version.txt.
• src/hca/hcat/mysite/hcat/tests.py
  • lines changed 3, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/urls.py
  • lines changed 9, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/hcat/views.py
  • lines changed 8, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/manage.py
  • lines changed 21, context: html, text, full: html, text
    b67620b44867b6e82788c5ef51f0343b3a896b49 Thu Aug 29 20:27:46 2019 -0700
    We need this, hopefully won't edit it much since it is big and auto-generated.
• src/hca/hcat/mysite/mysite/__init__.py
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    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/mysite/settings.py
  • lines changed 131, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
  • lines changed 1, context: html, text, full: html, text
    b1efc313b2bc37844ae7eb34c8688028273c9c50 Thu Aug 29 18:48:35 2019 -0700
    Overriding branding a little.
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    2e2981c14a8020c29dadaa43dae90578aa026180 Fri Aug 30 13:53:02 2019 -0700
    Flipping from kentDjangoTest3 to hcat database by using different my.cfg file. Starting to define upload space, but still early and untested.
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    6cd30cb2f076610cff220d4dcc20f5c5d44f7bc0 Sat Aug 31 18:24:50 2019 -0700
    Updating to v 0.4. See version.txt for details. Should be a pure python commit except for version.txt.
• src/hca/hcat/mysite/mysite/urls.py
  • lines changed 23, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
  • lines changed 4, context: html, text, full: html, text
    f82195528b91713f5167587acc48a7602c82a39a Sat Aug 31 10:15:21 2019 -0700
    Adding a piece needed to serve uploaded files.
• src/hca/hcat/mysite/mysite/wsgi.py
  • lines changed 16, context: html, text, full: html, text
    7779544a249575ac1d472f5ab7c0c7c56ac91003 Thu Aug 29 16:54:41 2019 -0700
    First committed cut of Human Cell Atlas Tracker (HCAT) - a Django based relational database and webworks aimed at helping track progress of projects being imported into the HCA-DCP.
• src/hca/hcat/mysite/templates/admin/base_site.html
  • lines changed 9, context: html, text, full: html, text
    8e58068e40e3fb260ba7d739c5fda54e32704499 Thu Aug 29 18:36:37 2019 -0700
    Making it say HCA Tracker where it used to say Django Admin
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    a53c8ebc806f28e0034fedad326a6b3e66b023f1 Fri Aug 30 13:53:47 2019 -0700
    Added 0.2 version number.
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    9ab46f8b8d8076c1a10885670610d21945d364a5 Sat Aug 31 10:05:48 2019 -0700
    Bumped visible version number
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    6cd30cb2f076610cff220d4dcc20f5c5d44f7bc0 Sat Aug 31 18:24:50 2019 -0700
    Updating to v 0.4. See version.txt for details. Should be a pure python commit except for version.txt.
• src/hca/hcat/mysite/versions.txt
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    576155058d5d0784762bd0836151736fee4ca3fc Sat Aug 31 10:06:06 2019 -0700
    Adding file that explains differences between versions.
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    6cd30cb2f076610cff220d4dcc20f5c5d44f7bc0 Sat Aug 31 18:24:50 2019 -0700
    Updating to v 0.4. See version.txt for details. Should be a pure python commit except for version.txt.
• src/hg/hgConvert/hgConvert.c
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    9f158762f68caa09ea19da2d6988d82a3c94e087 Wed Aug 28 19:11:39 2019 -0700
    fix bug in hgConvert that made it think inactive db's were perfect for conversions
• src/hg/hgc/hgc.c
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    9f06a7e9627b6d1b42edb4ef3a555b59d3119d76 Wed Aug 28 08:55:53 2019 -0700
    Change sqlQuickString to hRangeQuery for code review feedback, refs #24047
• src/hg/htdocs/FAQ/FAQblat.html
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    8cd442780bffa931d7e6931dbea51bb6f7da4098 Wed Aug 28 13:47:14 2019 -0700
    Adding chr_alt chr_fix mention in FAQ title now linked from BLAT/PCR refs #23201
• src/hg/htdocs/goldenPath/history.html
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    fda05243e52df85755904e8fe22cb05cc84e5aa5 Mon Aug 26 14:54:56 2019 -0700
    added attribution for a punctuation example
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    96c2606027143a39814b829c7312fd7f6a10f84c Mon Aug 26 14:56:35 2019 -0700
    improved punctuation of sentence
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    3be7ea86656077b1ceba780f5d2388be39700529 Tue Aug 27 10:35:03 2019 -0700
    made a few minor edits for clarity or punctuation
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    bd20ab0b9b864dd251d23750e8d8f4a8e3606d0f Thu Aug 29 16:00:37 2019 -0700
    Adding links to other projects on the history page, refs #20314
• src/hg/htdocs/goldenPath/newsarch.html
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    e83fda291c4fe2450644234253e0f6f209a01a9e Mon Aug 26 14:09:18 2019 -0700
    Revert "Add googleAnalytics calls to static page footers. fixes #23969" This reverts commit dbccb3494beb352ff8031fadd376306f59a15dc6. Conflicts: src/hg/htdocs/makefile
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    19282531348464c2d4fe51cb055f3fe65cfb6f47 Mon Aug 26 14:42:55 2019 -0700
    Fixing release dates refs #23734
• src/hg/htdocs/goldenPath/pubs.html
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    2149564e9be8c09129efea5a9216298a49cd54df Thu Aug 29 15:49:07 2019 -0700
    correcting link to paper
• src/hg/htdocs/images/newBlueHelix3.jpg
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    d5cabbcdc6d3a3bbdf3c40ce9e73075c79f176fa Tue Aug 27 14:15:06 2019 -0700
    reduce image quality to %25 and remove all extra comment exif and non image data to make much smaller file size refs #24057
• src/hg/htdocs/inc/gbFooter.html
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    e83fda291c4fe2450644234253e0f6f209a01a9e Mon Aug 26 14:09:18 2019 -0700
    Revert "Add googleAnalytics calls to static page footers. fixes #23969" This reverts commit dbccb3494beb352ff8031fadd376306f59a15dc6. Conflicts: src/hg/htdocs/makefile
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    a801edd4ca52442ca46acc4adff08be53cd4fc32 Mon Aug 26 14:09:37 2019 -0700
    Revert "adding googleAnalytics to static pages" This reverts commit 37009aa2a5d31a0093401540f402992ddd122345.
• src/hg/htdocs/inc/gbFooterHardcoded.html
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    e83fda291c4fe2450644234253e0f6f209a01a9e Mon Aug 26 14:09:18 2019 -0700
    Revert "Add googleAnalytics calls to static page footers. fixes #23969" This reverts commit dbccb3494beb352ff8031fadd376306f59a15dc6. Conflicts: src/hg/htdocs/makefile
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    a801edd4ca52442ca46acc4adff08be53cd4fc32 Mon Aug 26 14:09:37 2019 -0700
    Revert "adding googleAnalytics to static pages" This reverts commit 37009aa2a5d31a0093401540f402992ddd122345.
• src/hg/htdocs/inc/gbsFooter.html
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    e83fda291c4fe2450644234253e0f6f209a01a9e Mon Aug 26 14:09:18 2019 -0700
    Revert "Add googleAnalytics calls to static page footers. fixes #23969" This reverts commit dbccb3494beb352ff8031fadd376306f59a15dc6. Conflicts: src/hg/htdocs/makefile
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    a801edd4ca52442ca46acc4adff08be53cd4fc32 Mon Aug 26 14:09:37 2019 -0700
    Revert "adding googleAnalytics to static pages" This reverts commit 37009aa2a5d31a0093401540f402992ddd122345.
• src/hg/htdocs/inc/googleAnalytics.html
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    a801edd4ca52442ca46acc4adff08be53cd4fc32 Mon Aug 26 14:09:37 2019 -0700
    Revert "adding googleAnalytics to static pages" This reverts commit 37009aa2a5d31a0093401540f402992ddd122345.
• src/hg/htdocs/inc/jWestFooter.html
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    e83fda291c4fe2450644234253e0f6f209a01a9e Mon Aug 26 14:09:18 2019 -0700
    Revert "Add googleAnalytics calls to static page footers. fixes #23969" This reverts commit dbccb3494beb352ff8031fadd376306f59a15dc6. Conflicts: src/hg/htdocs/makefile
• src/hg/htdocs/indexNews.html
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    19282531348464c2d4fe51cb055f3fe65cfb6f47 Mon Aug 26 14:42:55 2019 -0700
    Fixing release dates refs #23734
• src/hg/htdocs/training/index.html
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    7050ac4ddb1ef90aff6961c6912f8560752b17d6 Mon Aug 26 14:15:08 2019 -0700
    removed seattle workshop. moved ghana into near-future list
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    fcc3f00615b090e3f8402997b22fe39a51ef7a9b Mon Aug 26 14:17:03 2019 -0700
    changed word to computationAL
• src/hg/inc/versionInfo.h
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    658dfc03388febb94358c1e04deb6f52312331fd Mon Sep 2 10:11:48 2019 -0700
    New version number v387
• src/hg/lib/lsSnpPdbChimera.c
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    0ccdf5567e3bebd6c9fb5737c0fa06302998a1f6 Fri Aug 30 10:20:26 2019 -0700
    Changing comment from ls-snp to mupit as per code review, refs #24047
• src/hg/makeDb/doc/rheMac10/initialBuild.txt
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    185bb036795666bc9d4d62d962f46eb318f588e0 Fri Aug 30 10:58:44 2019 -0700
    completed and in pushQ refs #23771
• src/hg/makeDb/trackDb/human/hg38/mane.ra
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    d3aada698cb658d20204bb9d589b46ac25ae70db Thu Aug 29 11:40:44 2019 -0700
    Changing release tags on mane track ref#23873
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    d3aada698cb658d20204bb9d589b46ac25ae70db Thu Aug 29 11:40:44 2019 -0700
    Changing release tags on mane track ref#23873
• src/hg/makeDb/trackDb/rhesus/rheMac10/trackDb.ra
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    7c48bf3a98bc684847e081d0b75d8fd17823ce4d Fri Aug 30 15:14:56 2019 -0700
    Adding a new track for default display refs #23771
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    59d4bdfc1b370259e4dc49658b3097f9a663d9af Fri Aug 30 15:17:54 2019 -0700
    Fixing the priorities for default displayed tracks refs #23771
• src/hg/makeDb/trackDb/stickleback/gasAcu1/multiz8way.html
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    f738b21f1dc2fb9614c5b44d2317196c6fc18ec7 Tue Aug 27 09:12:54 2019 -0700
    Updating http to https for gasAcu1, uiLinks cronjob.
• src/hg/makeDb/trackDb/stickleback/gasAcu1/phastConsElements8way.html
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    f738b21f1dc2fb9614c5b44d2317196c6fc18ec7 Tue Aug 27 09:12:54 2019 -0700
    Updating http to https for gasAcu1, uiLinks cronjob.
• src/hg/makeDb/trackDb/xenTro/xenTro2/multiz7way.html
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    8b3bda383622d0b10f9a819c3d024d6854dfabc3 Thu Aug 29 09:02:24 2019 -0700
    Updating http to https for xenTro2, uiLinks cronjob.
• src/hg/utils/automation/makeDownloads.pl
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    ff57913e526139de4da96e2984cd89f8c15a0df0 Fri Aug 30 15:26:42 2019 -0700
    correct biosample URL to NCBI refs #23771
• src/hg/utils/automation/makePushQSql.pl
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    2f46913934047d0f39c93be68233d2c45028f90e Fri Aug 30 08:02:57 2019 -0700
    correctly add other liftOvers to the file listings refs #23771
• src/inc/localmem.h
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    921232ef9a1527f02356e2af8e19a28628fe1774 Sat Aug 17 12:59:18 2019 -0700
    Adding lmJoinStrings.
• src/inc/srcVersion.h
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    658dfc03388febb94358c1e04deb6f52312331fd Mon Sep 2 10:11:48 2019 -0700
    New version number v387
• src/inc/strex.h
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    c622b3f8d3959b7f3eb53f3f4aec9b9e61c76989 Thu Aug 15 12:03:17 2019 -0700
    Added strexParseFile function, so can parse files as well as strings. Also added import operator, which is going to be so helpful for debugging and reusing complicated expressions.
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    40b7eafacdb27705e6f92636f8066a86c2be1c02 Sat Aug 17 10:55:43 2019 -0700
    Adding warnHandler and abortHandler arguments to strexEvalAsString in preparation for implementing warn() and error() constructs.
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    fd17e3c63508daeec40a961b1ebecbdadafbcfc0 Tue Aug 20 18:52:11 2019 -0700
    Adding a pointer to the symbol table to the warning and abort handler just in case they need a little more context.
• src/lib/csv.c
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    a523548600dfd06e19538e0bf9f4d5053e95a958 Thu Aug 15 10:17:55 2019 -0700
    A optimization was making the csv escapes not be applied when there were quotes, it was only triggered by commas. Needs both, so added second. At this point might be as fast to just always escape it as to make two shortcut passes though....
• src/lib/localmem.c
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    921232ef9a1527f02356e2af8e19a28628fe1774 Sat Aug 17 12:59:18 2019 -0700
    Adding lmJoinStrings.
• src/lib/strex.c
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    7ef20404a23038b61099344295dd592d1435850d Thu Aug 15 09:58:04 2019 -0700
    Adding default to pick.
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    c622b3f8d3959b7f3eb53f3f4aec9b9e61c76989 Thu Aug 15 12:03:17 2019 -0700
    Added strexParseFile function, so can parse files as well as strings. Also added import operator, which is going to be so helpful for debugging and reusing complicated expressions.
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    8253c29662c18914cefbcdee22100556fdfb4a95 Fri Aug 16 00:44:18 2019 -0700
    Fixed nasty erratic bug in strip that was erratic and caused by failing to null terminate a string. Made dots and dashes get turned to underbars in symbolify(). Dumping parse tree at verbosity 2 on the high level string parser.
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    2d795fa03e0ef57637885b4ddf9d13832143799b Fri Aug 16 11:55:57 2019 -0700
    Adding tidy builtin function.
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    10a280e3c8255ef35d6e08053893557b38c6701c Sat Aug 17 10:57:51 2019 -0700
    Refactoring code so that symbol table and lookup and local memory store is all combined into a strexRuntime structure, and passed as a single parameter rather than three in the evaluation chain. Then added warnHandler and abortHandler passed in to strexEvalAsString to it. All this is in preparation for implementing warn and error builtins.
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    6770ee085321b29453a487768932d1d782ca7e6e Sat Aug 17 13:02:03 2019 -0700
    Implemented warn() built in function.
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    c42b06abab5a57ec60a8c43f4bb531681f2a5612 Sat Aug 17 13:24:29 2019 -0700
    Implemented error() built in for the run time abort.
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    e426c85330ebdc250dc3aac7420b99f8028b476b Mon Aug 19 16:29:39 2019 -0700
    Fixed bug in short-cut evaluation of or.
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    515414f4cb5b0f71fc8f3c853c686fa5f10cd9b6 Tue Aug 20 10:04:53 2019 -0700
    Making symbol built in return empty result on empty input.
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    fd17e3c63508daeec40a961b1ebecbdadafbcfc0 Tue Aug 20 18:52:11 2019 -0700
    Adding a pointer to the symbol table to the warning and abort handler just in case they need a little more context.
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    f84f4ea07153528a12d96ce39cccef38031e1065 Fri Aug 23 21:08:18 2019 -0700
    Adding 'not' operation and renaming split to word and separate to chop to help distinguish it a bit from python since the split doesn't quite work like python's
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    dd33f82508a1b779c3b827d221cb7651a253cd36 Fri Aug 23 22:52:34 2019 -0700
    Adding in builtins letter_range, word_range, and chop_range.
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    096810933835a726e7f66566b29a8bcd3f0f9bea Sun Aug 25 19:59:25 2019 -0700
    Fixed bug in word_range and chop_range
• src/lib/strex.doc
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    7ef20404a23038b61099344295dd592d1435850d Thu Aug 15 09:58:04 2019 -0700
    Adding default to pick.
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    c622b3f8d3959b7f3eb53f3f4aec9b9e61c76989 Thu Aug 15 12:03:17 2019 -0700
    Added strexParseFile function, so can parse files as well as strings. Also added import operator, which is going to be so helpful for debugging and reusing complicated expressions.
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    2d795fa03e0ef57637885b4ddf9d13832143799b Fri Aug 16 11:55:57 2019 -0700
    Adding tidy builtin function.
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    f9165e2b6abbc1d31f2cc90799ef1809187114b3 Sat Aug 17 13:24:53 2019 -0700
    Describing warn() and error() functions.
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    dd33f82508a1b779c3b827d221cb7651a253cd36 Fri Aug 23 22:52:34 2019 -0700
    Adding in builtins letter_range, word_range, and chop_range.
• src/lib/tokenizer.c
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    f84f4ea07153528a12d96ce39cccef38031e1065 Fri Aug 23 21:08:18 2019 -0700
    Adding 'not' operation and renaming split to word and separate to chop to help distinguish it a bit from python since the split doesn't quite work like python's
• src/tabFile/tabToTabDir/tabToTabDir.c
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    4b01240686b94aa3741c88be640e1851c93fc25c Fri Aug 16 00:44:58 2019 -0700
    Removing an unneeded layer of parens.
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    27f5d7f9b4cc6d337ab34422b25a1c94553623e9 Fri Aug 16 11:54:34 2019 -0700
    Adding a define stanza with variables that get evaluated each line.
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    2929cf35d62aebb61c313234faeb4d4e59152233 Fri Aug 16 12:36:23 2019 -0700
    Oops left in parse tree debugging.
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    870467bf9a07275e1e50faae952da0582c555907 Sat Aug 17 09:54:55 2019 -0700
    Improving some error messages.
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    40b7eafacdb27705e6f92636f8066a86c2be1c02 Sat Aug 17 10:55:43 2019 -0700
    Adding warnHandler and abortHandler arguments to strexEvalAsString in preparation for implementing warn() and error() constructs.
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    642796e1b54a3dc8fd01fafe71aa350258fdfc6e Sat Aug 17 13:03:14 2019 -0700
    Added a little warning handler. So far it just uniqifies output. Later mayber it'll give line numbers in the input tsv file.
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    187cba345b7f6f661c0282024c13437cd0c2e2bd Tue Aug 20 18:52:54 2019 -0700
    Fixed a bug in warning/error message production and added line numbers and file name to it.
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    6322c0c620672f1c1a4529110fdc8fabef4ce7fe Sun Aug 25 20:01:50 2019 -0700
    Keeping track of strex calls and fixing problem where it was called when not needed.
• src/tabFile/tabToTabDir/tests/expected/a_strex_test.tsv
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    96455284545336409e07953a21e4f963eaef0b70 Fri Aug 16 09:30:07 2019 -0700
    Adding test cases for tidy function.
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    3175d1a6542ccdaea84a293eaa15375ffb965de0 Sat Aug 17 13:05:28 2019 -0700
    Adding warn() test case.
• src/tabFile/tabToTabDir/tests/expected/var_test.tsv
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    27f5d7f9b4cc6d337ab34422b25a1c94553623e9 Fri Aug 16 11:54:34 2019 -0700
    Adding a define stanza with variables that get evaluated each line.
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    79e6c7b11fff9c27f611e1969a0a79be5fa89921 Fri Aug 23 23:22:45 2019 -0700
    Adding new function word_range to test suite.
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    1938e5c63c8240b1cad887fd544733b98475c40b Fri Aug 23 23:30:11 2019 -0700
    Adding not to test suite.
• src/tabFile/tabToTabDir/tests/input/spec.txt
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    96455284545336409e07953a21e4f963eaef0b70 Fri Aug 16 09:30:07 2019 -0700
    Adding test cases for tidy function.
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    27f5d7f9b4cc6d337ab34422b25a1c94553623e9 Fri Aug 16 11:54:34 2019 -0700
    Adding a define stanza with variables that get evaluated each line.
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    3175d1a6542ccdaea84a293eaa15375ffb965de0 Sat Aug 17 13:05:28 2019 -0700
    Adding warn() test case.
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    61880e9a394d1eb8416c8b8f3396fc4a0f7a372a Fri Aug 23 21:15:17 2019 -0700
    Adjusting test set to builtin function name changes.
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    79e6c7b11fff9c27f611e1969a0a79be5fa89921 Fri Aug 23 23:22:45 2019 -0700
    Adding new function word_range to test suite.
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    e6ee1c8973c11312a9a75912b0e6f9adb3053465 Fri Aug 23 23:24:28 2019 -0700
    Adding new function chop_range to test suite.
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    8aa0cfd168cc6efaa8d9949b8a379f86b05d2053 Fri Aug 23 23:29:21 2019 -0700
    Adding not to test suite.
• src/tagStorm/tagStormToTab/tagStormToTab.c
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    c5b007a19e5d71dfb584b81c41a83926e0158b45 Fri Aug 16 13:07:18 2019 -0700
    Reducing verbosity. It's such a routine tool it now runs silently. What it was saying wasn't informative anyway.
• src/utils/qa/weeklybld/buildEnv.csh
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    fc10798efd37cfe039eafa317646e65a5f1cfdcb Mon Aug 26 10:02:55 2019 -0700
    v387 preview2, refs #24021
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    0fb0f5ddfe649e323d6232f456190e7f3252927a Mon Sep 2 10:02:43 2019 -0700
    v387 final build, refs #24021
• src/utils/strexCalc/strexCalc.c
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    40b7eafacdb27705e6f92636f8066a86c2be1c02 Sat Aug 17 10:55:43 2019 -0700
    Adding warnHandler and abortHandler arguments to strexEvalAsString in preparation for implementing warn() and error() constructs.
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    c1eff85585566a80230f3fda73cff6810cfe244e Fri Aug 30 14:02:35 2019 -0700
    Adjusting to new API that wants and extra parameter for context.

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