File Changes for kate

v388_base to v389_preview (2019-09-23 to 2019-09-30) v389

• src/hg/hgTracks/barChartTrack.c
  • lines changed 441, context: html, text, full: html, text
    f96fa3ebcc5514dbd65078df1ac4955748d27af5 Tue Sep 17 13:55:51 2019 -0700
    Long-needed refactoring. Prior to implementing new setting to limit chart size. refs #24161
  • lines changed 13, context: html, text, full: html, text
    e37bc753fd4ecbc758ea232a79905a139909e75b Tue Sep 17 15:44:38 2019 -0700
    Add barChartMaxSize setting to limit size of charts (override semantic zoom). Values are small/medium/large (defaults to large). refs #24161
• src/hg/hgTracks/hgTracks.c
  • lines changed 136, context: html, text, full: html, text
    faf17a6ad5e1cf7379a375b106f4900990d35c2d Tue Apr 23 16:10:51 2019 -0700
    Support for summary file to improve performance of collapseEmptySubtracks setting. This implementation is first cut for the feature (w/o UI). refs #23365
  • lines changed 6, context: html, text, full: html, text
    d24ed481a58b99783bcaad71d5aee510b4572a29 Tue Sep 24 16:26:01 2019 -0700
    Rename trackDb setting for hiding empty subtracks (w/ backward compatibility). refs #23365
  • lines changed 142, context: html, text, full: html, text
    f5ba7e5371b8bcf6c260d065b971e57c09eca1ad Wed Sep 25 10:56:06 2019 -0700
    Merging
  • lines changed 109, context: html, text, full: html, text
    64b2c5bd9ab0e2bd59360c39298ae54e97615407 Thu Sep 26 13:30:43 2019 -0700
    Add UI control to hide empty subtracks. refs #23365
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    faf17a6ad5e1cf7379a375b106f4900990d35c2d Tue Apr 23 16:10:51 2019 -0700
    Support for summary file to improve performance of collapseEmptySubtracks setting. This implementation is first cut for the feature (w/o UI). refs #23365
  • lines changed 3, context: html, text, full: html, text
    f5ba7e5371b8bcf6c260d065b971e57c09eca1ad Wed Sep 25 10:56:06 2019 -0700
    Merging
• src/hg/hgTracks/simpleTracks.c
  • lines changed 2, context: html, text, full: html, text
    f5ba7e5371b8bcf6c260d065b971e57c09eca1ad Wed Sep 25 10:56:06 2019 -0700
    Merging
  • lines changed 1, context: html, text, full: html, text
    64b2c5bd9ab0e2bd59360c39298ae54e97615407 Thu Sep 26 13:30:43 2019 -0700
    Add UI control to hide empty subtracks. refs #23365
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 5, context: html, text, full: html, text
    da5716e1c78af89c9b39a989701c7e4ba8c236e2 Tue Sep 24 15:40:56 2019 -0700
    Document barChartMaxSize setting. refs #23691
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 5, context: html, text, full: html, text
    da5716e1c78af89c9b39a989701c7e4ba8c236e2 Tue Sep 24 15:40:56 2019 -0700
    Document barChartMaxSize setting. refs #23691
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 9, context: html, text, full: html, text
    da5716e1c78af89c9b39a989701c7e4ba8c236e2 Tue Sep 24 15:40:56 2019 -0700
    Document barChartMaxSize setting. refs #23691
• src/hg/inc/barChartUi.h
  • lines changed 7, context: html, text, full: html, text
    e37bc753fd4ecbc758ea232a79905a139909e75b Tue Sep 17 15:44:38 2019 -0700
    Add barChartMaxSize setting to limit size of charts (override semantic zoom). Values are small/medium/large (defaults to large). refs #24161
• src/hg/inc/hui.h
  • lines changed 10, context: html, text, full: html, text
    64b2c5bd9ab0e2bd59360c39298ae54e97615407 Thu Sep 26 13:30:43 2019 -0700
    Add UI control to hide empty subtracks. refs #23365
• src/hg/lib/bed3Sources.as
  • lines changed 9, context: html, text, full: html, text
    faf17a6ad5e1cf7379a375b106f4900990d35c2d Tue Apr 23 16:10:51 2019 -0700
    Support for summary file to improve performance of collapseEmptySubtracks setting. This implementation is first cut for the feature (w/o UI). refs #23365
• src/hg/lib/hui.c
  • lines changed 57, context: html, text, full: html, text
    62abffb9b3bc4dc77214ea9128636037686fb7b7 Wed Sep 25 15:08:09 2019 -0700
    Minor code refactor to remove duplication before adding new feature. refs #23365
  • lines changed 70, context: html, text, full: html, text
    64b2c5bd9ab0e2bd59360c39298ae54e97615407 Thu Sep 26 13:30:43 2019 -0700
    Add UI control to hide empty subtracks. refs #23365
• src/hg/lib/wiggleCart.c
  • lines changed 1, context: html, text, full: html, text
    0c0c2f708b2972bf78b5cc4341396bca1d9c6e34 Tue Aug 8 13:02:50 2017 -0700
    Support for max height in barChart (reusing from wiggle). refs #19872
• src/hg/makeDb/doc/encode3/tfbs.txt
  • lines changed 79, context: html, text, full: html, text
    faf17a6ad5e1cf7379a375b106f4900990d35c2d Tue Apr 23 16:10:51 2019 -0700
    Support for summary file to improve performance of collapseEmptySubtracks setting. This implementation is first cut for the feature (w/o UI). refs #23365
• src/hg/makeDb/trackDb/human/hg38/encode3.ra
  • lines changed 1, context: html, text, full: html, text
    faf17a6ad5e1cf7379a375b106f4900990d35c2d Tue Apr 23 16:10:51 2019 -0700
    Support for summary file to improve performance of collapseEmptySubtracks setting. This implementation is first cut for the feature (w/o UI). refs #23365
  • lines changed 13197, context: html, text, full: html, text
    189bd07809d0dc4125ef2c43b6a8e9a6a4ebf872 Mon Jul 29 09:52:44 2019 -0700
    Gave up on merging this
• src/hg/makeDb/trackDb/mouse/mm10/encode3.atac.ra
  • lines changed 14, context: html, text, full: html, text
    0e21ffef07796a9f33cf7500d120eb480eec7072 Mon Sep 23 14:40:46 2019 -0700
    Adjust default tracks based on input from D. Gorkin. refs #23970
• src/hg/makeDb/trackDb/mouse/mm10/encode3.chromHmm.ra
  • lines changed 4, context: html, text, full: html, text
    4ce8f539c0427437858ef3a8590ae184f049030f Mon Sep 23 13:48:15 2019 -0700
    Adjust defaults, based on input from D. Gorkin. refs #24128
• src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra
  • lines changed 23, context: html, text, full: html, text
    0d7d207d6124780140c7c8427c638e986a475442 Mon Sep 23 14:41:07 2019 -0700
    Adjust default tracks based on input from D. Gorkin. refs #23693
  • lines changed 563, context: html, text, full: html, text
    8b9477ba0a31209d16910db2c6b228aee3e1b7f8 Mon Sep 23 15:12:50 2019 -0700
    Cleanup
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html
  • lines changed 44, context: html, text, full: html, text
    f7acf08a5582e5a898faaa8c9735c1c44b2825f3 Tue Sep 24 14:51:40 2019 -0700
    Add summary methods, draft of data access and credits. refs #23881
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.encode3.ra
  • lines changed 2, context: html, text, full: html, text
    a2f154d98e17a25dbd18718b9ae4a29070efb1d7 Mon Sep 23 14:40:10 2019 -0700
    Adjust ordering of tracks in supertrack. refs #23880
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    7a975046edd84e2742f808cab2498691657dd5ba Mon Sep 23 15:13:06 2019 -0700
    Add missing type
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    20ec2e933ac40fff5932e1bf01d0285a2da9bf45 Tue Sep 24 16:14:47 2019 -0700
    Add new barCHart setting. refs #23691
  • lines changed 1, context: html, text, full: html, text
    d24ed481a58b99783bcaad71d5aee510b4572a29 Tue Sep 24 16:26:01 2019 -0700
    Rename trackDb setting for hiding empty subtracks (w/ backward compatibility). refs #23365