Commits for kate

v388_base to v389_preview (2019-09-23 to 2019-09-30) v389

84c7cccd4e73ae813e002bc5259e8dc5aa226be4 Tue Aug 8 12:56:56 2017 -0700

• Merge branch 'master' into barchart-maxheight-noscale

0c0c2f708b2972bf78b5cc4341396bca1d9c6e34 Tue Aug 8 13:02:50 2017 -0700

• Support for max height in barChart (reusing from wiggle). refs #19872
  • src/hg/lib/wiggleCart.c - lines changed 1, context: html, text, full: html, text

9cf9b4e6984c26dc377154573ee3581d5d32777d Tue Nov 28 11:39:11 2017 -0800

• Merge conflict

faf17a6ad5e1cf7379a375b106f4900990d35c2d Tue Apr 23 16:10:51 2019 -0700

• Support for summary file to improve performance of collapseEmptySubtracks setting. This implementation is first cut for the feature (w/o UI). refs #23365
  • src/hg/hgTracks/hgTracks.c - lines changed 136, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/bed3Sources.as - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/doc/encode3/tfbs.txt - lines changed 79, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 1, context: html, text, full: html, text

189bd07809d0dc4125ef2c43b6a8e9a6a4ebf872 Mon Jul 29 09:52:44 2019 -0700

• Gave up on merging this
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 13197, context: html, text, full: html, text

fde7529635e5066dd8807beaae2664a778af7c53 Mon Sep 16 17:37:23 2019 -0700

• Merge branch 'master' into barchart-maxheight-noscale

5c968564b12f66081b76e24b202140f32557e2c2 Tue Sep 17 11:35:42 2019 -0700

• Merge branch 'master' into barchart-maxheight2

f96fa3ebcc5514dbd65078df1ac4955748d27af5 Tue Sep 17 13:55:51 2019 -0700

• Long-needed refactoring. Prior to implementing new setting to limit chart size. refs #24161
  • src/hg/hgTracks/barChartTrack.c - lines changed 441, context: html, text, full: html, text

e37bc753fd4ecbc758ea232a79905a139909e75b Tue Sep 17 15:44:38 2019 -0700

• Add barChartMaxSize setting to limit size of charts (override semantic zoom). Values are small/medium/large (defaults to large). refs #24161
  • src/hg/hgTracks/barChartTrack.c - lines changed 13, context: html, text, full: html, text
  • src/hg/inc/barChartUi.h - lines changed 7, context: html, text, full: html, text

4ce8f539c0427437858ef3a8590ae184f049030f Mon Sep 23 13:48:15 2019 -0700

• Adjust defaults, based on input from D. Gorkin. refs #24128
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.chromHmm.ra - lines changed 4, context: html, text, full: html, text

a2f154d98e17a25dbd18718b9ae4a29070efb1d7 Mon Sep 23 14:40:10 2019 -0700

• Adjust ordering of tracks in supertrack. refs #23880
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.encode3.ra - lines changed 2, context: html, text, full: html, text

0e21ffef07796a9f33cf7500d120eb480eec7072 Mon Sep 23 14:40:46 2019 -0700

• Adjust default tracks based on input from D. Gorkin. refs #23970
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.atac.ra - lines changed 14, context: html, text, full: html, text

0d7d207d6124780140c7c8427c638e986a475442 Mon Sep 23 14:41:07 2019 -0700

• Adjust default tracks based on input from D. Gorkin. refs #23693
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra - lines changed 23, context: html, text, full: html, text

8b9477ba0a31209d16910db2c6b228aee3e1b7f8 Mon Sep 23 15:12:50 2019 -0700

• Cleanup
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra - lines changed 563, context: html, text, full: html, text

7a975046edd84e2742f808cab2498691657dd5ba Mon Sep 23 15:13:06 2019 -0700

• Add missing type
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

f7acf08a5582e5a898faaa8c9735c1c44b2825f3 Tue Sep 24 14:51:40 2019 -0700

• Add summary methods, draft of data access and credits. refs #23881
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html - lines changed 44, context: html, text, full: html, text

48975926a15fae49854d9faf7f3d741785a59916 Tue Sep 24 14:52:01 2019 -0700

• Merge branch 'master' into barchart-maxheight2

da5716e1c78af89c9b39a989701c7e4ba8c236e2 Tue Sep 24 15:40:56 2019 -0700

• Document barChartMaxSize setting. refs #23691
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 9, context: html, text, full: html, text

20ec2e933ac40fff5932e1bf01d0285a2da9bf45 Tue Sep 24 16:14:47 2019 -0700

• Add new barCHart setting. refs #23691
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

d24ed481a58b99783bcaad71d5aee510b4572a29 Tue Sep 24 16:26:01 2019 -0700

• Rename trackDb setting for hiding empty subtracks (w/ backward compatibility). refs #23365
  • src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

f5ba7e5371b8bcf6c260d065b971e57c09eca1ad Wed Sep 25 10:56:06 2019 -0700

• Merging
  • src/hg/hgTracks/hgTracks.c - lines changed 142, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text

62abffb9b3bc4dc77214ea9128636037686fb7b7 Wed Sep 25 15:08:09 2019 -0700

• Minor code refactor to remove duplication before adding new feature. refs #23365
  • src/hg/lib/hui.c - lines changed 57, context: html, text, full: html, text

64b2c5bd9ab0e2bd59360c39298ae54e97615407 Thu Sep 26 13:30:43 2019 -0700

• Add UI control to hide empty subtracks. refs #23365
  • src/hg/hgTracks/hgTracks.c - lines changed 109, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 10, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 70, context: html, text, full: html, text