File Changes for jnavarr5

v391_preview2 to v391_base (2019-11-18 to 2019-12-02) v391

• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 4, context: html, text, full: html, text
    bf1863eee800c5bca944aa44e7ab3c2c954c0cd0 Mon Nov 18 10:01:00 2019 -0800
    Removing strange characters that show up on the webpage, no Redmine.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 18, context: html, text, full: html, text
    349b1915dc2dbae9181adb5b0c270254b8e5a36f Mon Nov 25 13:02:01 2019 -0800
    Announcing the LOVD composite track change, refs #24408.
  • lines changed 39, context: html, text, full: html, text
    7ec5f6b170c7eee12739e419d7890daa4a331fcb Wed Nov 27 16:37:42 2019 -0800
    Announcing the EPD track for human and mouse, refs #23881 and #23888
• src/hg/htdocs/indexNews.html
  • lines changed 13, context: html, text, full: html, text
    349b1915dc2dbae9181adb5b0c270254b8e5a36f Mon Nov 25 13:02:01 2019 -0800
    Announcing the LOVD composite track change, refs #24408.
  • lines changed 9, context: html, text, full: html, text
    7ec5f6b170c7eee12739e419d7890daa4a331fcb Wed Nov 27 16:37:42 2019 -0800
    Announcing the EPD track for human and mouse, refs #23881 and #23888
• src/hg/makeDb/trackDb/epdNewPromoter.html
  • lines changed 12, context: html, text, full: html, text
    261e5208364f3825a86f8a80256e841a7b8f7507 Fri Nov 22 15:46:11 2019 -0800
    Editing the track description page to have line lengths less than 100 characters and indenting the HTML list, refs #23888
  • lines changed 13, context: html, text, full: html, text
    00f7911632fbc57aef0298adb49a64e7e7f238ba Mon Nov 25 15:08:58 2019 -0800
    Making line lengths less than 100 characters, refs #23888
• src/hg/makeDb/trackDb/human/hg16/encodeMlaganAlign.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeAmplicon.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeBase.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeProb.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeQuality.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeTbaAlign.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/hapmapLd.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/mzPt1Mm3Rn3Gg2_pHMM.html
  • lines changed 2, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    b2bf06d1938cc86f2bee8c36984c47ac699a911c Wed Nov 27 16:49:00 2019 -0800
    Adding the pennantIcon for the newly released EPD tracks, refs #23888 and #23881
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    b2bf06d1938cc86f2bee8c36984c47ac699a911c Wed Nov 27 16:49:00 2019 -0800
    Adding the pennantIcon for the newly released EPD tracks, refs #23888 and #23881
• src/hg/makeDb/trackDb/human/lovdComp.html
  • lines changed 46, context: html, text, full: html, text
    10530f734a3c301a58c7ea30ffe5d74559215561 Tue Nov 19 16:50:02 2019 -0800
    Making all the line lengths less than 100 characters. Also adding hyperlinks for the URLs referenced in the text. In the trackDb.ra file, the correct HTML file is specified using the 'html' trackDb option. refs #24408
  • lines changed 53, context: html, text, full: html, text
    dfbcbc98dac158890c1d7e9cce6338cd6d446fa5 Thu Nov 21 13:10:10 2019 -0800
    Creating lists of the URLs and variant types to make it easier to read, refs #24408
  • lines changed 35, context: html, text, full: html, text
    55714b9d6370aa54873fe0c58e5618c984a357dc Fri Nov 22 11:32:57 2019 -0800
    Removing databases that do not exist anymore, refs #24408
• src/hg/makeDb/trackDb/human/perlegen.html
  • lines changed 1, context: html, text, full: html, text
    8f3b6d3c57e3a1b970ee63c759546a144b17eb98 Tue Nov 19 13:27:42 2019 -0800
    Updating redirected links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    10530f734a3c301a58c7ea30ffe5d74559215561 Tue Nov 19 16:50:02 2019 -0800
    Making all the line lengths less than 100 characters. Also adding hyperlinks for the URLs referenced in the text. In the trackDb.ra file, the correct HTML file is specified using the 'html' trackDb option. refs #24408
  • lines changed 6, context: html, text, full: html, text
    edc8f59828de1e36a4583e1bd6c35dbd1ec692e6 Fri Nov 22 15:16:02 2019 -0800
    Staging the LOVD track on the hgwbeta. Turning off Table Browser usage like on the RR, refs #24408
  • lines changed 15, context: html, text, full: html, text
    631b128d1dec1926bddca573b3e5b6c6ce9cb41f Fri Nov 22 15:57:57 2019 -0800
    Releasing the LOVD composite changes to the RR, refs #24408
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html
  • lines changed 15, context: html, text, full: html, text
    3bd1cb49a4ecf0b49c662453d5c301b9b75a9ccd Mon Nov 18 16:11:07 2019 -0800
    Making the line length less than 100 characters, refs #23881
  • lines changed 23, context: html, text, full: html, text
    6982375a8f7edf6b89491e57eb55460bd80cb0d3 Mon Nov 25 15:12:05 2019 -0800
    Making line lengths less than 100 characters, refs #23881
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.ra
  • lines changed 1, context: html, text, full: html, text
    b2bf06d1938cc86f2bee8c36984c47ac699a911c Wed Nov 27 16:49:00 2019 -0800
    Adding the pennantIcon for the newly released EPD tracks, refs #23888 and #23881
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    b2bf06d1938cc86f2bee8c36984c47ac699a911c Wed Nov 27 16:49:00 2019 -0800
    Adding the pennantIcon for the newly released EPD tracks, refs #23888 and #23881
• src/product/installer/browserSetup.sh
  • lines changed 1, context: html, text, full: html, text
    4135384610a351357fc0c99af2e1dddd77139bde Wed Nov 27 10:42:55 2019 -0800
    Adding the knownGeneToTag tables for the minimal tables downloaded for a database, refs #24540
  • lines changed 1, context: html, text, full: html, text
    a7afb0ad8dd1393590625f077324ba0f3e04cb79 Wed Nov 27 12:41:48 2019 -0800
    Fixing a typo. The correct spelling of missing table is 'knownToTag' not 'knownGeneToTag', refs #24573
  • lines changed 1, context: html, text, full: html, text
    02424e8a450eb2268a4b402b50862bac68bacb07 Wed Nov 27 14:48:32 2019 -0800
    Adding another missing table that a was discovered during the testing of the build patch ticket, refs #24573