Commits for max

v390_base to v391_preview (2019-11-04 to 2019-11-11) v391

369670e8f1e34a12f871e1c7a682455cc6625f62 Tue Nov 5 15:57:55 2019 +0100

• forgot to commit a test file for chromFixer
  • src/utils/chromFixer/tests/mm10.chromAlias.tsv - lines changed 154, context: html, text, full: html, text

4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100

• renaming chromFixer to chromToUcsc, refs #24407
  • src/utils/chromFixer/chromFixer - lines changed 151, context: html, text, full: html, text
  • src/utils/chromFixer/hg19.chromAlias.tsv - lines changed 890, context: html, text, full: html, text
  • src/utils/chromFixer/hg38.chromAlias.tsv - lines changed 1785, context: html, text, full: html, text
  • src/utils/chromFixer/makefile - lines changed 9, context: html, text, full: html, text
  • src/utils/chromFixer/tests/expected/hg19.bed - lines changed 1, context: html, text, full: html, text
  • src/utils/chromFixer/tests/expected/mm10.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromFixer/tests/in/hg19.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromFixer/tests/in/mm10.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromFixer/tests/makefile - lines changed 5, context: html, text, full: html, text
  • src/utils/chromFixer/tests/mm10.chromAlias.tsv - lines changed 154, context: html, text, full: html, text
  • src/utils/chromToUcsc/chromToUcsc - lines changed 153, context: html, text, full: html, text
  • src/utils/chromToUcsc/hg19.chromAlias.tsv - lines changed 890, context: html, text, full: html, text
  • src/utils/chromToUcsc/hg38.chromAlias.tsv - lines changed 1785, context: html, text, full: html, text
  • src/utils/chromToUcsc/makefile - lines changed 12, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/expected/hg19.bed - lines changed 1, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/expected/mm10.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/in/hg19.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/in/mm10.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/makefile - lines changed 5, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/mm10.chromAlias.tsv - lines changed 154, context: html, text, full: html, text

9d81235b0452e72118cc4821639a62905839f6f6 Tue Nov 5 07:26:55 2019 -0800

• fixing test, refs #24407
  • src/hg/htdocs/images/round_build_black_18dp.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/utils/chromFixer/tests/makefile - lines changed 1, context: html, text, full: html, text

ca2af7511d7ec668de3bc164254bf8f8b1ca67b2 Tue Nov 5 23:07:58 2019 +0100

• hopefully the last chromToUcsc thing that broke the build...
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text

6a0cf4baa7b72e5e17e68ffa357ac6abe474cc67 Tue Nov 5 14:22:53 2019 -0800

• removing output from tests for chromToUcsc, refs #24407
  • src/utils/chromToUcsc/tests/makefile - lines changed 2, context: html, text, full: html, text

c67566f6e81f825be0d93c664ad82757082fcae0 Thu Nov 7 06:41:28 2019 -0800

• adding branch protection suggested by Kate and originally from MarkD: if you're not on the master branch, you cannot run 'make cgi-alpha' or 'make alpha' anymore. This hopefully protects hgwdev from my own stupidity. No redmine, but related to various build error messages and threads to browser-staff over the last few days.
  • src/makefile - lines changed 7, context: html, text, full: html, text

7d7c308bd9179bd340bcac7d0c80c7c930f45fcf Thu Nov 7 07:29:38 2019 -0800

• fixing yet another broken build
  • src/utils/chromToUcsc/tests/makefile - lines changed 2, context: html, text, full: html, text