File Changes for hiram

v394_preview to v394_preview2 (2020-02-03 to 2020-02-10) v394

• src/hg/js/dbDbTaxonomy.js
  • lines changed 13, context: html, text, full: html, text
    73d5d95546fe4a76f4d6496afadfc7539394fde6 Wed Feb 5 14:16:15 2020 -0800
    Adding Wuhan virus and the Southern sea otters
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    a45fb4cc1f361361c355f561cd357cbdfff019b6 Thu Feb 6 09:54:50 2020 -0800
    shorten the Wuhan virus name refs #24851
• src/hg/makeDb/doc/hg19.txt
  • lines changed 73, context: html, text, full: html, text
    4517be681f866a76adedd0aee1203b1028ff7511 Thu Feb 6 15:12:46 2020 -0800
    begin documentation for doseSensitivity track refs #24818
  • lines changed 67, context: html, text, full: html, text
    bbeaefa58e83db818c7e57f778510e1802aa32ea Thu Feb 6 15:17:34 2020 -0800
    add toUcsc.pl script refs #24818
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    9d63cc04f4da43dc2f454a55c1144b1604c29ab1 Thu Feb 6 15:23:56 2020 -0800
    add .as file and ftp location script refs #24818
• src/hg/makeDb/doc/wuhCor1/initialBuild.txt
  • lines changed 83, context: html, text, full: html, text
    196c636d851bf2cda5a0b8a5279fbb911e0fffa1 Tue Feb 4 15:39:59 2020 -0800
    cleaned up completed documentation refs #24851
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    ab5ee73ba548db44a6e6eb7a204c45c4144eb322 Thu Feb 6 15:47:09 2020 -0800
    trying the doseSensitivity as part of the ClinGen CNVs composite refs #24818
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    605b30da8394e16952523b94d16ebd44bcb32fbb Mon Feb 10 08:06:25 2020 -0800
    adding rmsk Hmmer track no redmine
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 32, context: html, text, full: html, text
    ab5ee73ba548db44a6e6eb7a204c45c4144eb322 Thu Feb 6 15:47:09 2020 -0800
    trying the doseSensitivity as part of the ClinGen CNVs composite refs #24818
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    674d93aa435c3f73f6e626dcbab70eec0ed2b3a6 Wed Feb 5 10:49:08 2020 -0800
    outlink to NCBI for ncbiGene and add search method refs #24851
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 5, context: html, text, full: html, text
    dd27449e2ac4790137f84c232f6f3ff3f79e1556 Tue Feb 4 14:07:15 2020 -0800
    now using the new GCF FTP hierarchy layout refs #23891
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 52, context: html, text, full: html, text
    dd27449e2ac4790137f84c232f6f3ff3f79e1556 Tue Feb 4 14:07:15 2020 -0800
    now using the new GCF FTP hierarchy layout refs #23891
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    ab2031dab96a23d652266a19f0fe12992304bd84 Thu Feb 6 16:53:56 2020 -0800
    warn only for liftUp not error out duplicates cause missing refs #23891
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    b9032792e3f2d0e704ecaf56b1fac45457acaa37 Fri Feb 7 14:54:23 2020 -0800
    eliminate : in chr names and correctly reading dup list where needed refs #23891
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 30, context: html, text, full: html, text
    dd27449e2ac4790137f84c232f6f3ff3f79e1556 Tue Feb 4 14:07:15 2020 -0800
    now using the new GCF FTP hierarchy layout refs #23891
  • lines changed 2, context: html, text, full: html, text
    4513440c373f2ba57b4d28910e832b4dc85108f5 Thu Feb 6 16:53:25 2020 -0800
    warn only for liftUp not error out duplicates cause missing refs #23891