Commits for max

v395_base to v396_preview (2020-03-09 to 2020-03-16) v396

cbe7391bbaffe17d27056884a9c33d0489e57f90 Mon Mar 9 11:39:29 2020 -0700

• adding hg19 analysis set, refs #25100
  • src/hg/makeDb/doc/hg19.analysisSet.txt - lines changed 41, context: html, text, full: html, text

76607ba1c1c488b88d7121ce6e78c2cb5d0c59ca Tue Mar 10 02:51:37 2020 -0700

• changes after code review, refs #25105
  • src/utils/doClinvarLift - lines changed 1, context: html, text, full: html, text

2ec22bc5fa605aebe9576301f7f238566d61e9e8 Tue Mar 10 04:00:22 2020 -0700

• adding indexed files for aligners, refs #25100
  • src/hg/makeDb/doc/hg19.analysisSet.txt - lines changed 15, context: html, text, full: html, text

f72322167bc143b5d6e9d6b81e6a0d0d0765b64c Wed Mar 11 01:56:00 2020 -0700

• adding note about mitochondrial genome on hg19, but commented out. QA should uncomment the note with the release of #24648. refs #24648
  • src/hg/makeDb/trackDb/human/clinvar.html - lines changed 8, context: html, text, full: html, text

6149c6794aa3b64b8d2cecd3f3a948bfa7d0a5d8 Wed Mar 11 03:42:42 2020 -0700

• adapting clinvar colors for refs #25118, and tiny mouseover fix
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 20, context: html, text, full: html, text

36f54a92956a350a2e61453b47c52e4286a1f942 Thu Mar 12 07:10:13 2020 -0700

• adding more details to gbic.html refs #25123
  • src/hg/htdocs/goldenPath/help/gbic.html - lines changed 10, context: html, text, full: html, text

21d5d63590ae47d277ebe83a048f3ded1f446783 Mon Mar 16 01:06:03 2020 -0700

• fixing ncbiRefSeq in offline mode on gbib, email from user
  • src/hg/hgMirror/hgMirror - lines changed 1, context: html, text, full: html, text

12b98c83c904de4e3e9d1d2f140781678936b90f Mon Mar 16 04:49:27 2020 -0700

• py3 changes for bedFixBlockOverlaps, no redmine
  • src/utils/bedFixBlockOverlaps - lines changed 1, context: html, text, full: html, text