File Changes for hiram

v396_preview to v396_preview2 (2020-03-16 to 2020-03-23) v396

• src/hg/makeDb/doc/assemblyEquivalence/README.txt
  • lines changed 147, context: html, text, full: html, text
    caa7d37fe23e92494b9c694c2e91c8d98e3a846c Thu Mar 19 12:51:40 2020 -0700
    document the procedure refs #24547
• src/hg/makeDb/doc/danRer10/lastzRuns.txt
  • lines changed 222, context: html, text, full: html, text
    6091558bab452de0ba020f3e08a9d20ef9aa3d81 Wed Mar 18 19:09:58 2020 -0700
    lastz runs for 12-way alignment on danRer10 per research request no redmine
• src/hg/makeDb/doc/danRer10/multiz12way.txt
  • lines changed 1547, context: html, text, full: html, text
    1a0f4d5f930cae12004cec43fbb0cc6f34774651 Wed Mar 18 16:23:38 2020 -0700
    12-way alignment on danRer10 per researcher request to redmine
• src/hg/makeDb/doc/galGal6/lastzRuns.txt
  • lines changed 73, context: html, text, full: html, text
    6091558bab452de0ba020f3e08a9d20ef9aa3d81 Wed Mar 18 19:09:58 2020 -0700
    lastz runs for 12-way alignment on danRer10 per research request no redmine
• src/hg/makeDb/doc/wuhCor1/initialBuild.txt
  • lines changed 5, context: html, text, full: html, text
    d7a0a8fc6582a80932f8ac14edfaefc988d08963 Tue Mar 17 09:24:16 2020 -0700
    defaultPosition reset to whole sequence refs #24851
• src/hg/makeDb/doc/wuhCor1/multiz44.txt
  • lines changed 122, context: html, text, full: html, text
    f20d7975d0373acb690ba6df158ed9a39786f9a1 Wed Mar 18 11:44:06 2020 -0700
    finished with 44-way track refs #25187
• src/hg/makeDb/doc/wuhCor1/phastCons119way.txt
  • lines changed 4, context: html, text, full: html, text
    b05f926380653f4581aabe1521ff12799f244925 Thu Mar 19 14:22:56 2020 -0700
    fix dates on DONE statements refs #25187
• src/hg/makeDb/doc/wuhCor1/phastCons44way.txt
  • lines changed 13, context: html, text, full: html, text
    f20d7975d0373acb690ba6df158ed9a39786f9a1 Wed Mar 18 11:44:06 2020 -0700
    finished with 44-way track refs #25187
  • lines changed 4, context: html, text, full: html, text
    b05f926380653f4581aabe1521ff12799f244925 Thu Mar 19 14:22:56 2020 -0700
    fix dates on DONE statements refs #25187
• src/hg/makeDb/doc/wuhCor1/snpView.44way.txt
  • lines changed 11, context: html, text, full: html, text
    f20d7975d0373acb690ba6df158ed9a39786f9a1 Wed Mar 18 11:44:06 2020 -0700
    finished with 44-way track refs #25187
• src/hg/makeDb/doc/xenTro9/lastzRuns.txt
  • lines changed 67, context: html, text, full: html, text
    6091558bab452de0ba020f3e08a9d20ef9aa3d81 Wed Mar 18 19:09:58 2020 -0700
    lastz runs for 12-way alignment on danRer10 per research request no redmine
• src/hg/makeDb/schema/all.joiner
  • lines changed 15, context: html, text, full: html, text
    bac632e3041cdfd281733475e9429cb283266e6c Fri Mar 20 08:19:19 2020 -0700
    adding tablesIgnored for wuhCor1 refs #25187
• src/hg/makeDb/trackDb/virus/wuhCor1/cons119way.html
  • lines changed 24, context: html, text, full: html, text
    df0cd0f673fc986780f2ce78ae2b32803720f79b Mon Mar 16 15:22:01 2020 -0700
    small corrections to text refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/cons44way.html
  • lines changed 443, context: html, text, full: html, text
    e0474e610833d8e58cc5c828b9bc99bc0e536444 Mon Mar 16 15:18:50 2020 -0700
    add 44-way description page refs #25090
  • lines changed 1, context: html, text, full: html, text
    df0cd0f673fc986780f2ce78ae2b32803720f79b Mon Mar 16 15:22:01 2020 -0700
    small corrections to text refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/epitopes.ra
  • lines changed 0, context: html, text, full: html, text
    7502a793d1219ff6be9741878055eb873d565d9e Mon Mar 16 10:20:33 2020 -0700
    correct track type bigBed 9 + not bigBed 9+ refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.119way.ra
  • lines changed 1, context: html, text, full: html, text
    879041dca6623320be63dbcbfceaf82dec2bd49a Wed Mar 18 09:24:41 2020 -0700
    update default visibility refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.44way.ra
  • lines changed 2, context: html, text, full: html, text
    879041dca6623320be63dbcbfceaf82dec2bd49a Wed Mar 18 09:24:41 2020 -0700
    update default visibility refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    92565d0dde74969729cf021838a55e94fe3147ba Wed Mar 18 09:10:10 2020 -0700
    adding the 44-way with strain names refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.strainName44way.ra
  • lines changed 105, context: html, text, full: html, text
    92565d0dde74969729cf021838a55e94fe3147ba Wed Mar 18 09:10:10 2020 -0700
    adding the 44-way with strain names refs #25090
  • lines changed 1, context: html, text, full: html, text
    449553d2b9dbbe845fb8c5fc2fca9bf016297650 Wed Mar 18 09:14:35 2020 -0700
    using html for cons44way refs #25090
  • lines changed 11, context: html, text, full: html, text
    b8d4a65b4dd1c477971a7d8f6c97ef8a6bc71e2d Wed Mar 18 09:21:51 2020 -0700
    updated short and long labels from Max update refs #25090
  • lines changed 1, context: html, text, full: html, text
    879041dca6623320be63dbcbfceaf82dec2bd49a Wed Mar 18 09:24:41 2020 -0700
    update default visibility refs #25090
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 1, context: html, text, full: html, text
    7f4217b12c9e6a7185a37ebc4d43c40cab29b85c Fri Mar 20 13:41:16 2020 -0700
    errro out when all files can not be found refs #24547
• src/hg/utils/automation/perlPara.pl
  • lines changed 196, context: html, text, full: html, text
    84de43168bbf2952470fb8757c79a585c8668a8a Fri Mar 20 14:28:31 2020 -0700
    useful script to run a list of commands in a fashion similar to a parasol batch refs #24547