File Changes for hiram

v398_preview to v398_preview2 (2020-04-27 to 2020-05-04) v398

• src/hg/makeDb/doc/asmHubs/asmHubs.mk
  • lines changed 8, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/asmHubs/mkAsmStats.pl
  • lines changed 29, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/asmHubs/mkGenomes.pl
  • lines changed 20, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
  • lines changed 28, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
  • lines changed 31, context: html, text, full: html, text
    951ae58cfc4a8b6b7dec665cbabb524abb4fc67a Fri May 1 13:09:53 2020 -0700
    add class column in the table for VGP genomes refs #23734
• src/hg/makeDb/doc/asmHubs/mkSymLinks.pl
  • lines changed 19, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/asmHubs/trackData.pl
  • lines changed 132, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/asmHubs/vgp.asmId.commonName.tsv
  • lines changed 157, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/asmHubs/vgp.commonName.asmId.orderList.tsv
  • lines changed 157, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/vgpAsmHub/VGPlogo.png
  • lines changed 0, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/vgpAsmHub/hub.txt
  • lines changed 6, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/vgpAsmHub/makefile
  • lines changed 9, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId,asmId.class.txt
  • lines changed 157, context: html, text, full: html, text
    67d50873eca0ae6f595367077c9735b7d348e5c2 Fri May 1 12:31:59 2020 -0700
    adding functions to build VGP index pages refs #23734
• src/hg/makeDb/doc/wuhCor1/multiz.txt
  • lines changed 25, context: html, text, full: html, text
    48af17eb015e5c81e22f0cff23d181c50949aa5b Thu Apr 30 22:28:03 2020 -0700
    added 119-way strain name track refs #25090
• src/hg/makeDb/doc/wuhCor1/phastCons119way.txt
  • lines changed 3, context: html, text, full: html, text
    48af17eb015e5c81e22f0cff23d181c50949aa5b Thu Apr 30 22:28:03 2020 -0700
    added 119-way strain name track refs #25090
• src/hg/makeDb/doc/wuhCor1/snpView.txt
  • lines changed 16, context: html, text, full: html, text
    48af17eb015e5c81e22f0cff23d181c50949aa5b Thu Apr 30 22:28:03 2020 -0700
    added 119-way strain name track refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    94f0ea957bc608c6a17998aeca1a3c2776955bc0 Thu Apr 30 22:15:03 2020 -0700
    adding 119-way track with strain names refs #25090
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.strainName119way.ra
  • lines changed 107, context: html, text, full: html, text
    2478e0f72dfcd5d1c86b0a7a2107a9274e1f719b Thu Apr 30 22:17:32 2020 -0700
    adding 119-way track with strain names refs #25090
  • lines changed 1, context: html, text, full: html, text
    757f6bb40349e3d5075dd90a34f91c069a9493b2 Thu Apr 30 22:24:47 2020 -0700
    using cons119way.html for description refs #25090
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 50, context: html, text, full: html, text
    6a48e07c2fbefbf0a0e5e74662dd768ef93fca88 Wed Apr 29 11:27:30 2020 -0700
    adding ncbiRmsk option to use NCBI rm.out.gz file instead of cluster run and record versionInfo.txt of RepeatMasker operation refs #23734
  • lines changed 2, context: html, text, full: html, text
    db6d277aafb53f3f3d5bad08d3821ae98a29a045 Wed Apr 29 14:29:34 2020 -0700
    fix use of verbose() in ncbiGene refs #23734
• src/hg/utils/automation/doRepeatMasker.pl
  • lines changed 104, context: html, text, full: html, text
    6a48e07c2fbefbf0a0e5e74662dd768ef93fca88 Wed Apr 29 11:27:30 2020 -0700
    adding ncbiRmsk option to use NCBI rm.out.gz file instead of cluster run and record versionInfo.txt of RepeatMasker operation refs #23734