Commits for kate

v398_base to v399_preview (2020-05-11 to 2020-05-18) v399

9599e99e622644fc958a1a6481b82778cfd9a27f Thu Feb 13 14:12:01 2020 -0800

• Initial cut adding supertrack info to member track UI. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 102, context: html, text, full: html, text

8cbb0ecb5318d7c1ea144ca08142aefe81865849 Wed Feb 19 09:39:08 2020 -0800

• Merge branch 'master' into superUi

8149e01f1abf2d532e4bc0cd516713a536640006 Wed Feb 19 12:08:24 2020 -0800

• Tweak to match Ana's mock-up. Still in progress. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 37, context: html, text, full: html, text

2ed451a171f3939be436ccc3bf6f0800f9df2a3a Fri Feb 21 17:41:17 2020 -0800

• Implement collapsible panel with supertrack description, to appear at top of supertrack component track config page. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 36, context: html, text, full: html, text

00a124ff86fdff0fcd6a4a96ee54e185d17a1f16 Mon May 4 13:33:48 2020 -0700

• Merge branch 'master' into superUi

bb2ae39fd12b2df4ec06b435e63f69da6097e21e Tue May 5 14:38:24 2020 -0700

• Add link to super-track HTML from supertrack member description collapsible panel. By request of Lou. refs #24668
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 4, context: html, text, full: html, text

b9d7723866095088387017765ea962f83e87bbfd Wed May 6 16:23:13 2020 -0700

• Add supertrack to supertrack member title bar. Part of attempt to make supertrack member UI page easier to understand (show hierarchy but subtly). refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 17, context: html, text, full: html, text
  • src/hg/lib/web.c - lines changed 3, context: html, text, full: html, text
  • src/inc/htmshell.h - lines changed 3, context: html, text, full: html, text
  • src/lib/htmshell.c - lines changed 8, context: html, text, full: html, text

9a54ece0b8406d393f065c03a0531d711ad6e5f3 Wed May 6 16:33:52 2020 -0700

• Take 2 on removing 'super-track' from supertrack blue bar. Off-shoot of discussion on better supertrack member track UI pages. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 1, context: html, text, full: html, text

1e695a4eb7c3df8d90db67d0859efb86fde53201 Wed May 6 17:51:49 2020 -0700

• Add collapsed panel with other tracks in supertrackand remove intro verbiage. Overall slim down the top material indicating hierarchy. Based on UI input from Ana and MarkD. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 59, context: html, text, full: html, text

4ad18f5e3c3e5b960a138161d8048cd7d3a2f34d Wed May 6 18:01:29 2020 -0700

• Fix styling. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 4, context: html, text, full: html, text

7597f413c7812055e03a9dd5177432be2a827571 Thu May 7 08:59:01 2020 -0700

• Remove second section, moving supertrack info into main section to simplify page. Expecting this to be final design (has hadded extensive UI review). refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 121, context: html, text, full: html, text

1e4593e163722bd3878db5d83392b57525ec9ca2 Mon May 11 12:45:42 2020 -0700

• Update Nextstrain transmission graphic on COVID-19 page. refs #25217
  • src/hg/htdocs/covid19.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/images/covid19-transmission.may8_2020.nextstrain.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

85154a6ca6d1acae41c3dc7ac97d6f58d23496cb Mon May 11 12:58:36 2020 -0700

• Add info about our bioRxiv paper. refs #25217
  • src/hg/htdocs/covid19.html - lines changed 8, context: html, text, full: html, text

43b7a59f5c89e140c4fe3bb8ec696bf469e45a24 Mon May 11 16:05:22 2020 -0700

• Merge branch 'master' into superUi

60fb3562b8ca97c4e215049c9092e01eb6ce70cc Mon May 11 16:19:31 2020 -0700

• Switch back to listing all tracks in super (not 'other'). Request of MarkD. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 6, context: html, text, full: html, text

306429a79f9eedb8614ad52c6f5e2ad60bc50449 Mon May 11 16:54:58 2020 -0700

• Reverting html and web lib changes for allowing tags in title bars. (For now, limiting to trackUi). refs #24948
  • src/hg/lib/web.c - lines changed 1, context: html, text, full: html, text
  • src/inc/htmshell.h - lines changed 3, context: html, text, full: html, text
  • src/lib/htmshell.c - lines changed 8, context: html, text, full: html, text

363ca5c576b616861e58d410da17f24cc562db96 Mon May 11 16:56:59 2020 -0700

• Use existing backdoor to allow HTML tags for styling in trackUi title bar. Request of MarkD to include parent short label in supertrack member title (show hierarchy), prompted motivation to expand styling. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text

2c78d69bf51c0282d97dd262b8f9005f1c5d3192 Tue May 12 16:32:36 2020 -0700

• Polish track config and draft track description. refs #24668
  • src/hg/makeDb/trackDb/encodeCcreCombined.html - lines changed 151, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.encode3.ra - lines changed 9, context: html, text, full: html, text

c1bf92e8d0500957bef941593240f66eabe8094d Wed May 13 10:30:24 2020 -0700

• Polish track description and generalize to include mouse. Add 4-char labels for classification and abbreviated accession label as per JK. Filter on the more user-friendly classification labels. refs #24668
  • src/hg/makeDb/trackDb/encodeCcreCombined.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.encode3.ra - lines changed 2, context: html, text, full: html, text

877b1886b6e9ee73fa26477cbf83bbf16771bb3d Wed May 13 16:24:46 2020 -0700

• Restore ENCODE logo to track header (not supertrack). Remove uplink to all tracks in group from the supertrack link. Maybe we decided to remove this generally ?. refs #24948
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 23, context: html, text, full: html, text

79142546956ba8b0d94175b6e0adcb0c5c01172d Wed May 13 16:56:19 2020 -0700

• Fixes to doc for hideEmptySubtracks settings, refs #23365
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 10, context: html, text, full: html, text