Commits for hiram

v401_preview to v401_preview2 (2020-06-29 to 2020-07-06) v401

2124c0c0e1b0fd852f6078625627742252405af6 Mon Jun 29 10:08:47 2020 -0700

• started build then became obsolete refs #23111
  • src/hg/makeDb/doc/perManBai1/initialBuild.sh - lines changed 941, context: html, text, full: html, text

148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700

• now correctly numbering reverse strand exons refs #25379
  • src/hg/genePredToGtf/genePredToGtf.c - lines changed 21, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/basicSimpleTest.gtf - lines changed 75, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/basicTest.gtf - lines changed 86, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/honorTest.gtf - lines changed 104, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf - lines changed 91, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/utrTest.gtf - lines changed 102, context: html, text, full: html, text

71250d609029a99f76dda0869838ba9fff9fbbd7 Wed Jul 1 10:53:01 2020 -0700

• chainNet droSim2 vs. droSec1 per user request refs #134764
  • src/hg/makeDb/doc/droSim2/initialBuild.txt - lines changed 70, context: html, text, full: html, text

a1691f6b23c5406023f8743fe131af96c5539f18 Wed Jul 1 12:40:32 2020 -0700

• correct Bob Harris reference for lastz refs #25827
  • src/hg/makeDb/trackDb/chainNet.html - lines changed 8, context: html, text, full: html, text
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 4, context: html, text, full: html, text

a688821c6fc714f05ecd4459d964e6858a7f5c54 Fri Jul 3 11:53:38 2020 -0700

• must have chrom= on SQL statements when getting a full table refs #25840
  • src/hg/hubApi/getData.c - lines changed 2, context: html, text, full: html, text

ee8ccbdc5c25c9ac877293777c3c0272f78afd14 Fri Jul 3 17:32:45 2020 -0700

• adding panPan3 chainNet refs #25720
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.euarchontoglireChainNet.ra - lines changed 17, context: html, text, full: html, text

608044d23640516fd06338d04d98960048699b07 Mon Jul 6 08:59:20 2020 -0700

• adding list/schema tests and redmine25840 refs #25840
  • src/hg/hubApi/tests/expected/redmine25840.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/jsonConsumer.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/hubApi/tests/makefile - lines changed 7, context: html, text, full: html, text

4b7cccd4848bd579564403688f065f551fdb3924 Mon Jul 6 09:38:21 2020 -0700

• fixing redmine25840 also fixed this test8 refs #25840
  • src/hg/hubApi/tests/expected/test8.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

8ab8f8939ea13c9aa2190f2bb52516c6521dbc8f Mon Jul 6 09:45:00 2020 -0700

• fixing redmine25840 also fixed this test42 refs #25840
  • src/hg/hubApi/tests/expected/test42.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700

• bring expected up to date with new data contents no redmine
  • src/hg/hubApi/tests/expected/list03.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/list09.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test0.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test19.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test27.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test41.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)