File Changes for galt

v405_preview2 to v405_base (2020-09-28 to 2020-10-05) v405

• src/blat/version.doc
  • lines changed 1, context: html, text, full: html, text
    972f44485e27c59335c665585715be63a2d224df Thu Oct 1 17:40:11 2020 -0700
    Adding timeout for gfServer read and write. Hopefully this will fix both the recent problem from Wuhan killing all our translated blat servers, as well as the mysterious hangs which happen occasionally and end up causing the admins to have to restart the server. refs #26285
• src/gfServer/gfServer.c
  • lines changed 18, context: html, text, full: html, text
    972f44485e27c59335c665585715be63a2d224df Thu Oct 1 17:40:11 2020 -0700
    Adding timeout for gfServer read and write. Hopefully this will fix both the recent problem from Wuhan killing all our translated blat servers, as well as the mysterious hangs which happen occasionally and end up causing the admins to have to restart the server. refs #26285
• src/hg/cirm/gateway/htdocs/makefile
  • lines changed 8, context: html, text, full: html, text
    f38e5dc68bf6f38793f31e56d7728a8fb4ac3892 Sun Oct 4 14:57:54 2020 -0700
    Fixing makefiles to not depend on git repo commands when run from decompressed source code archive without any git repo. Requested by MarkD and Max.
• src/hg/hgBlat/hgBlat.c
  • lines changed 8, context: html, text, full: html, text
    8903bc0ed0ed0a5b499ff4552be2c5c0c8835015 Thu Oct 1 16:34:03 2020 -0700
    Fixing minor problem with hgBlat Blat-All handling of empty input such as just a blank line, which leads to zero sequences in input.
• src/hg/htdocs/makefile
  • lines changed 8, context: html, text, full: html, text
    f38e5dc68bf6f38793f31e56d7728a8fb4ac3892 Sun Oct 4 14:57:54 2020 -0700
    Fixing makefiles to not depend on git repo commands when run from decompressed source code archive without any git repo. Requested by MarkD and Max.
• src/hg/htdocs/style/makefile
  • lines changed 8, context: html, text, full: html, text
    f38e5dc68bf6f38793f31e56d7728a8fb4ac3892 Sun Oct 4 14:57:54 2020 -0700
    Fixing makefiles to not depend on git repo commands when run from decompressed source code archive without any git repo. Requested by MarkD and Max.
• src/inc/genoFind.h
  • lines changed 1, context: html, text, full: html, text
    972f44485e27c59335c665585715be63a2d224df Thu Oct 1 17:40:11 2020 -0700
    Adding timeout for gfServer read and write. Hopefully this will fix both the recent problem from Wuhan killing all our translated blat servers, as well as the mysterious hangs which happen occasionally and end up causing the admins to have to restart the server. refs #26285