Commits for galt

v405_preview2 to v405_base (2020-09-28 to 2020-10-05) v405

8903bc0ed0ed0a5b499ff4552be2c5c0c8835015 Thu Oct 1 16:34:03 2020 -0700

• Fixing minor problem with hgBlat Blat-All handling of empty input such as just a blank line, which leads to zero sequences in input.
  • src/hg/hgBlat/hgBlat.c - lines changed 8, context: html, text, full: html, text

972f44485e27c59335c665585715be63a2d224df Thu Oct 1 17:40:11 2020 -0700

• Adding timeout for gfServer read and write. Hopefully this will fix both the recent problem from Wuhan killing all our translated blat servers, as well as the mysterious hangs which happen occasionally and end up causing the admins to have to restart the server. refs #26285
  • src/blat/version.doc - lines changed 1, context: html, text, full: html, text
  • src/gfServer/gfServer.c - lines changed 18, context: html, text, full: html, text
  • src/inc/genoFind.h - lines changed 1, context: html, text, full: html, text

f38e5dc68bf6f38793f31e56d7728a8fb4ac3892 Sun Oct 4 14:57:54 2020 -0700

• Fixing makefiles to not depend on git repo commands when run from decompressed source code archive without any git repo. Requested by MarkD and Max.
  • src/hg/cirm/gateway/htdocs/makefile - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/makefile - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/style/makefile - lines changed 8, context: html, text, full: html, text