Commits for braney

v406_preview to v406_preview2 (2020-10-12 to 2020-10-19) v406

31faf99a48eae623ca44df250f1808673ee8d536 Wed Oct 14 06:59:27 2020 -0700

• fix one place where the difference between a type bigBed # can break if the actual bigBed has fewer columns
  • src/hg/hgTracks/bedTrack.c - lines changed 2, context: html, text, full: html, text

ca1497842a28959b779f82251283f5cb8954466c Wed Oct 14 07:03:07 2020 -0700

• finalizing hgc page for Clinvar Submissions Summary track
  • src/hg/hgc/clinvarSubLolly.c - lines changed 76, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/clinvarSubLolly.ra - lines changed 9, context: html, text, full: html, text

71b63c33bfccd2e143fff9a0759097bc83491614 Wed Oct 14 12:59:35 2020 -0700

• a placeholder for the Clinvar Submissions track
  • src/hg/makeDb/trackDb/human/clinvarSubLolly.html - lines changed 1, context: html, text, full: html, text

f8c74d56568a37f357df961ed46d9704a2557948 Wed Oct 14 13:20:02 2020 -0700

• some tweaks for Ana.
  • src/hg/hgc/clinvarSubLolly.c - lines changed 10, context: html, text, full: html, text

3b0d251fc556419285eca98739c70f717a9ac9b7 Sat Oct 17 06:31:52 2020 -0700

• add Max's OMIM bigify scripts to tree
  • src/hg/utils/otto/omim/bigifyOmim.sh - lines changed 22, context: html, text, full: html, text
  • src/hg/utils/otto/omim/omimGene2ToBigBed.py - lines changed 151, context: html, text, full: html, text

14f3a39d26850ba87b223f259052b92dc9aff278 Sat Oct 17 06:32:47 2020 -0700

• add xrefBigDataUrl to trackDb variables that get parsed to replace $D in their urls.
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 2, context: html, text, full: html, text

3f4772e689c620fa0db33a2522e362cdcc216047 Sat Oct 17 07:24:30 2020 -0700

• almost done with the clinvar submissions track!
  • src/hg/hgc/clinvarSubLolly.c - lines changed 24, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 22, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/clinvarSubLolly.txt - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/clinvarSubLolly.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.clinvar.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 4, context: html, text, full: html, text

03c6f92bbb5b7240805877bb3e7ca3dc43fdc3f9 Mon Oct 19 09:09:18 2020 -0700

• make sure clinvar submissions will work on GBiB.
  • src/hg/hgc/clinvarSubLolly.c - lines changed 2, context: html, text, full: html, text

2fc69e65e0e67d7efd09c8cc30926ac71fa47ed6 Mon Oct 19 10:03:56 2020 -0700

• v406 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text