File Changes for max

v415_base to v416_preview (2021-05-24 to 2021-06-01) v416

• LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/blat/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/autoXml/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/htdocs/conditions.html
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    d5ca45ddca96bf7a9756f5a250dd93d29e87103b Wed May 26 05:38:24 2021 -0700
    fixing conditions of use page, refs #27614
• src/hg/htdocs/goldenPath/help/gbic.html
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    e4d6c24a36a8d98fc285930bb3b390b1f77a56d9 Mon May 31 06:42:38 2021 -0700
    update to GBIC docs page, refs #27636
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    c84cc71e4df12de399ff9c00bc68faf5b711ed62 Mon May 31 06:54:06 2021 -0700
    another gbic docs update, refs #27636
• src/hg/htdocs/license/index.html
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    636a282f845f2264d0a8d767f039b573f70d22cb Wed May 26 05:30:44 2021 -0700
    clarifying license/index.html a little more, refs #27614
• src/hg/htdocs/style/HGStyle.css
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    2b135d602655887e43cae9ecd478d24c8fdf136c Thu May 27 05:33:50 2021 -0700
    centering error message box, refs #27460
• src/hg/makeDb/doc/hg38/revel.txt
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    86033e65a4fc49aa971526bfaa1778844c5a34da Wed May 26 02:05:19 2021 -0700
    adding a preliminary makedoc for revel on hg38, refs #27142, even though the hg38 revel track will not be released, as it is broken (emailed authors)
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    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/doc/wuhCor1/cd8Escape.txt
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    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/makeDb/revel/revelToWig-hg38.py
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    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/scripts/cd8Escape/escape_mutants.as
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    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/makeDb/scripts/cd8Escape/process_epitopes.py
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    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    480b442228c96496bd399c8c63d7e23aebc4eb15 Tue Jun 1 05:18:42 2021 -0700
    adding pennanticon for revel track on hg38, refs #27142
• src/hg/makeDb/trackDb/human/revel.html
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    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/trackDb/human/revel.ra
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    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/trackDb/relatedTracks.ra
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    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
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    480b442228c96496bd399c8c63d7e23aebc4eb15 Tue Jun 1 05:18:42 2021 -0700
    adding pennanticon for revel track on hg38, refs #27142
• src/hg/makeDb/trackDb/virus/wuhCor1/phyloGenes.html
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    b8199c996bd6603e6f9e43c8661134532032f4fa Tue Jun 1 02:41:14 2021 -0700
    adding phylocsf track, refs #25946
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
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    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/utils/pslLiftSubrangeBlat/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/pslLiftSubrangeBlat.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/.gitignore
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/expected/qSubRangeTest.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/expected/qtSubRangeTest.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/expected/tSubRangeTest.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qSubrange.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qSubrange.qsizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.qsizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.sizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/tSubrange.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/tSubrange.tsizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/raRecord.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/raRecord.h
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/raSqlQuery.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/test.ra
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/test2.ra
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/.gitignore
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/runtest
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.agp.gold
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.fa
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.gap.gold
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.lft.gold
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/jkOwnLib/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/optimalLeaf/LICENSE
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    86033e65a4fc49aa971526bfaa1778844c5a34da Wed May 26 02:05:19 2021 -0700
    adding a preliminary makedoc for revel on hg38, refs #27142, even though the hg38 revel track will not be released, as it is broken (emailed authors)
• src/product/ex.hg.conf
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    d78441779ba20c7b455b086247fd4c35e5e24a7a Wed May 26 03:26:41 2021 -0700
    adding docs for tableList, refs #27390
• src/tabFile/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/tagStorm/LICENSE
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/pslLiftSubrangeBlat.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/.gitignore
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/expected/qSubRangeTest.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/expected/qtSubRangeTest.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/expected/tSubRangeTest.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qSubrange.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qSubrange.qsizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.qsizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.sizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/tSubrange.psl
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/tSubrange.tsizes
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/raRecord.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/raRecord.h
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/raSqlQuery.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/test.ra
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/test2.ra
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/makefile
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/.gitignore
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/runtest
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.agp.gold
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.fa
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.gap.gold
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.lft.gold
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    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614