File Changes for markd

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v430_base to v431_preview (2022-04-25 to 2022-05-02) v431

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src/hg/makeDb/doc/chm13v2.0userData/build.txt
- lines changed 14, context: html, text, full: html, text
  d77f68cb2aedf8aa2a4951671d9fd391b2eab153 Mon Apr 25 22:17:21 2022 -0700
  added SGDP copy number tracks
- lines changed 11, context: html, text, full: html, text
  6391bfb6e9dfe4e7a408bb48ce36c85349766c46 Tue Apr 26 18:53:38 2022 -0700
  added CHM13 ENCODE tracks
- lines changed 60, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/html/encode.html
- lines changed 39, context: html, text, full: html, text
  6391bfb6e9dfe4e7a408bb48ce36c85349766c46 Tue Apr 26 18:53:38 2022 -0700
  added CHM13 ENCODE tracks
- lines changed 3, context: html, text, full: html, text
  678ed67d021746d2952c1cb85ce47078bea17c72 Tue Apr 26 19:17:48 2022 -0700
  fixed invalid characters in encode doc page
src/hg/makeDb/doc/chm13v2.0userData/html/sgdpCopyNumber.html
- lines changed 33, context: html, text, full: html, text
  d77f68cb2aedf8aa2a4951671d9fd391b2eab153 Mon Apr 25 22:17:21 2022 -0700
  added SGDP copy number tracks
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker-dense-mode.png
- lines changed 0, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker-full-mode.png
- lines changed 0, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker-orig-pack-mode.png
- lines changed 0, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker-pack-mode.png
- lines changed 0, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker.html
- lines changed 10911, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/makefile
- lines changed 2, context: html, text, full: html, text
  d77f68cb2aedf8aa2a4951671d9fd391b2eab153 Mon Apr 25 22:17:21 2022 -0700
  added SGDP copy number tracks
- lines changed 1, context: html, text, full: html, text
  6391bfb6e9dfe4e7a408bb48ce36c85349766c46 Tue Apr 26 18:53:38 2022 -0700
  added CHM13 ENCODE tracks
- lines changed 5, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/trackDb/encode.trackDb.txt
- lines changed 1601, context: html, text, full: html, text
  6391bfb6e9dfe4e7a408bb48ce36c85349766c46 Tue Apr 26 18:53:38 2022 -0700
  added CHM13 ENCODE tracks
src/hg/makeDb/doc/chm13v2.0userData/trackDb/sedefSegDups.trackDb.txt
- lines changed 1, context: html, text, full: html, text
  d77f68cb2aedf8aa2a4951671d9fd391b2eab153 Mon Apr 25 22:17:21 2022 -0700
  added SGDP copy number tracks
- lines changed 1, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/chm13v2.0userData/trackDb/sgdpCopyNumber.trackDb.txt
- lines changed 3498, context: html, text, full: html, text
  d77f68cb2aedf8aa2a4951671d9fd391b2eab153 Mon Apr 25 22:17:21 2022 -0700
  added SGDP copy number tracks
src/hg/makeDb/doc/chm13v2.0userData/trackDb/t2tRepeatMasker.trackDb.txt
- lines changed 10, context: html, text, full: html, text
  54a8de5f8364d2890ef8d414ac51a507050cc3f6 Thu Apr 28 11:32:49 2022 -0700
  added T2T generated repeat masker tracks
src/hg/makeDb/doc/hg19.gencode.txt
- lines changed 27, context: html, text, full: html, text
  df27ff9b4c8c6b68d14208aeafb1413f7d3437da Fri Apr 29 09:47:18 2022 -0700
  import V40lift37
src/hg/makeDb/doc/hg38/gencode.txt
- lines changed 42, context: html, text, full: html, text
  cb95ab0ac3de81c54babc8b9ba1326d93901ad96 Fri Apr 22 09:27:25 2022 -0700
  import of All GENCODE V40
src/hg/makeDb/doc/mm39/gencode.txt
- lines changed 31, context: html, text, full: html, text
  7df932575ba939fae740a585065f8bc3781851d7 Thu Apr 28 15:28:47 2022 -0700
  import GENCODE mouse VM29
src/hg/makeDb/outside/gencode/gencodeLoad.mk
- lines changed 4, context: html, text, full: html, text
  cb95ab0ac3de81c54babc8b9ba1326d93901ad96 Fri Apr 22 09:27:25 2022 -0700
  import of All GENCODE V40
- lines changed 2, context: html, text, full: html, text
  7df932575ba939fae740a585065f8bc3781851d7 Thu Apr 28 15:28:47 2022 -0700
  import GENCODE mouse VM29
- lines changed 2, context: html, text, full: html, text
  df27ff9b4c8c6b68d14208aeafb1413f7d3437da Fri Apr 29 09:47:18 2022 -0700
  import V40lift37
src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
- lines changed 1, context: html, text, full: html, text
  d821c2aa244dc0d0dd2f7e1d917d9def4026dbe7 Fri Apr 29 10:01:31 2022 -0700
  need to include mm39 and hg19 gencode updates in ra file
src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra
- lines changed 2, context: html, text, full: html, text
  cb95ab0ac3de81c54babc8b9ba1326d93901ad96 Fri Apr 22 09:27:25 2022 -0700
  import of All GENCODE V40
src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
- lines changed 4, context: html, text, full: html, text
  cb95ab0ac3de81c54babc8b9ba1326d93901ad96 Fri Apr 22 09:27:25 2022 -0700
  import of All GENCODE V40
src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra
- lines changed 1, context: html, text, full: html, text
  d821c2aa244dc0d0dd2f7e1d917d9def4026dbe7 Fri Apr 29 10:01:31 2022 -0700
  need to include mm39 and hg19 gencode updates in ra file
src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeSuper.html
- lines changed 4, context: html, text, full: html, text
  7df932575ba939fae740a585065f8bc3781851d7 Thu Apr 28 15:28:47 2022 -0700
  import GENCODE mouse VM29
src/utils/chromToUcsc/chromToUcsc
- lines changed 1, context: html, text, full: html, text
  ce16b1fd8bd824c6da07e6f427c389bdbb27ddc6 Sun Apr 24 17:01:44 2022 -0700
  corrected help doc on PSL column names

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