Commits for lrnassar

v432_preview to v432_preview2 (2022-05-23 to 2022-05-31) v432

9eda90a2965a1f62f801718e26fda708bcf7a950 Tue May 24 17:37:59 2022 -0700

• Creating new GenCC annotation track for hg19 and hg38, refs #28166
  • src/hg/makeDb/doc/hg38/genCC.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/scripts/genCC/doGenCC.py - lines changed 217, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/genCC.html - lines changed 130, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/genCC.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text

2b1f91e141939f73201a8acd041de4c572baef99 Wed May 25 18:01:30 2022 -0700

• Expanding MTR scores description, and touching up HMC and JARVIS. Refs #29152
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 45, context: html, text, full: html, text

4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700

• Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/scripts/mtr/buildMTRbedTrack.py - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/scripts/mtr/buildMTRwigTracks.py - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mtr.ra - lines changed 9, context: html, text, full: html, text

30f12992d85965a0ef8cb9238a3f292cb584cacf Thu May 26 20:19:56 2022 -0700

• Fixing min value to 0.001 since the lowest in that field is 0.003, a decimal is needed since having just a 0 also displayed items with no value in that field. Refs #29152
  • src/hg/makeDb/trackDb/human/mtr.ra - lines changed 1, context: html, text, full: html, text

5999a4947409f5c146359b0a2ddda404941cd591 Fri May 27 14:37:19 2022 -0700

• Fixing cons100way which had labeled equCab3 when it was actually built with equCab2. This caused some funky behavior when you clicked into the alignments. Refs #29395
  • src/hg/makeDb/trackDb/human/hg38/cons100way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra - lines changed 2, context: html, text, full: html, text

c3e7dd2ed09c26a4f93b260c71578064301fcd19 Fri May 27 15:13:25 2022 -0700

• Making small tweaks to wuhCor1 NS track update refs #29478
  • src/hg/makeDb/trackDb/virus/wuhCor1/pond.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pond.ra - lines changed 1, context: html, text, full: html, text