Commits for hiram

v437_preview to v437_preview2 (2022-09-05 to 2022-09-12) v437

01f7c63de3412c46292af37d9914134077f47cd2 Tue Sep 6 11:32:51 2022 -0700

• name fixups and set default on species refs #29898
  • src/hg/makeDb/trackDb/human/hg38/cons470way.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.470way.ra - lines changed 2, context: html, text, full: html, text

aaced70d252c2ef4bea708a182da0ecb3987a8c1 Wed Sep 7 10:52:40 2022 -0700

• adding TOGA vs. hg38 and vs. galGal6 tracks to database assemblies refs #29982
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 28, context: html, text, full: html, text

fe64746a8641a29b07cb641312297726e6ed4468 Wed Sep 7 15:50:58 2022 -0700

• adding description page for TOGA tracks refs #29982
  • src/hg/makeDb/trackDb/TOGAannotation.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

7aefb4e6059a96c47f3ab3b89745bf0f1c697fba Thu Sep 8 14:26:08 2022 -0700

• perfectly strict recognizing old style files no redmine
  • src/hg/utils/automation/aliasTextToBed.pl - lines changed 1, context: html, text, full: html, text

27d9d88ca49e60586c2d0b211971c8a360d862ac Thu Sep 8 23:00:48 2022 -0700

• sequenceName alias should properly be called assembly no redmine
  • src/hg/makeDb/doc/panPan3/initialBuild.txt - lines changed 7, context: html, text, full: html, text

f1032f731437a1dbc14a4a2b1be404ec929350ae Fri Sep 9 17:03:13 2022 -0700

• moving the ncbiRefSeq files to /gbdb/hs1/ncbiRefSeq/ refs #29762
  • src/hg/makeDb/trackDb/human/hs1/ncbiRefSeq.trackDb.ra - lines changed 9, context: html, text, full: html, text

353a13754f34e9cb62a9a841ae64e80c64fbe1d8 Fri Sep 9 18:47:21 2022 -0700

• protect against empty spam bot activity no redmine
  • src/hg/gar/gar.cgi.pl - lines changed 11, context: html, text, full: html, text