File Changes for hiram

v453_preview2 to v453_base (2023-08-21 to 2023-08-28) v453

• src/hg/makeDb/doc/asmHubs/master.run.list
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    18802096ad7f602950846d47793b4880abb32dab Fri Aug 25 10:04:36 2023 -0700
    adding GCF_009828535.3_HMol_V3 silvery gibbon (v3 HMO894 2021 UC Santa Cruz) for an update refs #29545
• src/hg/makeDb/doc/hg38/hg38.txt
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    568883e90c09ae0acc3a53010b2fc2f098cffa68 Tue Aug 22 10:11:29 2023 -0700
    some experiments with same species liftover to HPRC assemblies does not work refs #31561
• src/hg/makeDb/doc/hg38/hprc90way.txt
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    80af0d3fbbffc1d7f1a42972fd4630812d4550ae Mon Aug 21 14:58:11 2023 -0700
    loading up a 90-way maf file refs #31561
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    18802096ad7f602950846d47793b4880abb32dab Fri Aug 25 10:04:36 2023 -0700
    adding GCF_009828535.3_HMol_V3 silvery gibbon (v3 HMO894 2021 UC Santa Cruz) for an update refs #29545
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
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    25a09db69fab1cdea5d0e52746627048d23d2aa7 Thu Aug 24 20:21:57 2023 -0700
    add chain definition for GCA_018873775.2_hg01243.v3.0 to the primate composite refs #31844
• src/hg/makeDb/trackDb/human/hg38/trackDb.hprc90way.ra
  • lines changed 72, context: html, text, full: html, text
    165cf7071f83306d069fc2ae5ab48ccd13ffe9ef Mon Aug 21 13:49:26 2023 -0700
    adding a maf file alignment for the HPRC 90-way refs #31561
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    4cc2e8711aebda1711e13524c18fdce488898570 Mon Aug 21 13:52:49 2023 -0700
    adding a maf file alignment for the HPRC 90-way refs #31561
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 5, context: html, text, full: html, text
    dd7396650c2b83b7e8536eb63a076e46e350aba7 Mon Aug 21 13:50:41 2023 -0700
    tagTypes for HPRC 90-way groups refs #31561
• src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
  • lines changed 98, context: html, text, full: html, text
    478769000cef7d4756c3cdc13c0d61d698f08a2b Thu Aug 24 19:39:05 2023 -0700
    adding chainNet definitions for GCA_018873775.2_hg01243.v3.0 refs #31844
• src/hg/utils/automation/doXenoRefGene.pl
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    5f33fc0ebd5b0d47a27fb88cb78eff9aa0278e25 Thu Aug 24 13:52:09 2023 -0700
    add -ram argument to allow smaller ram size on the paraRun, this should be an argument to the paraRun setup no redmine