File Changes for angie

v454_preview2 to v454_base (2023-09-11 to 2023-09-18) v454

• src/hg/hgPhyloPlace/hgPhyloPlace.c
  • lines changed 16, context: html, text, full: html, text
    b6d356738ffdf5562cc71d22bacbfa1f0c5c65c4 Tue Sep 12 16:16:04 2023 -0700
    Add linkout (per subtree) to MicrobeTrace (in addition to Nextstrain) if subtreeSize is at most 500.
  • lines changed 8, context: html, text, full: html, text
    a6288fe651a8fa52b1510ee6c6b7ecb9db00dcd6 Thu Sep 14 10:02:50 2023 -0700
    Added description of MicrobeTrace to 'More information' section.
• src/hg/hgPhyloPlace/phyloPlace.c
  • lines changed 120, context: html, text, full: html, text
    b6d356738ffdf5562cc71d22bacbfa1f0c5c65c4 Tue Sep 12 16:16:04 2023 -0700
    Add linkout (per subtree) to MicrobeTrace (in addition to Nextstrain) if subtreeSize is at most 500.
  • lines changed 1, context: html, text, full: html, text
    b0db90c8f3e14751e17423f7e48ce6700468d61a Fri Sep 15 08:30:30 2023 -0700
    Fix typo in Nextstrain subtree link from result tables. HT @FedeGueli
  • lines changed 44, context: html, text, full: html, text
    8032b3fdf26b7de0f295588f47265207c0e41520 Fri Sep 15 10:40:41 2023 -0700
    Include MicrobeTrace subtree links in results table.
• src/hg/hgPhyloPlace/phyloPlace.h
  • lines changed 5, context: html, text, full: html, text
    b6d356738ffdf5562cc71d22bacbfa1f0c5c65c4 Tue Sep 12 16:16:04 2023 -0700
    Add linkout (per subtree) to MicrobeTrace (in addition to Nextstrain) if subtreeSize is at most 500.
  • lines changed 2, context: html, text, full: html, text
    8032b3fdf26b7de0f295588f47265207c0e41520 Fri Sep 15 10:40:41 2023 -0700
    Include MicrobeTrace subtree links in results table.
• src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
  • lines changed 58, context: html, text, full: html, text
    5f5a688287ed55e160046b1d2dabfb3117092fc2 Tue Sep 5 11:59:19 2023 -0700
    Added BA.2_*_27945 labels for homoplasic C27945T (unfortunately also designated as BA.2.65 which is more like a mini-BA.2) to avoid pangolin-data flip-flops of BA.2/BA.2.65 from one release to the next. Removed BA.5.2.1_no28330 label since its branch is gone after some permanent-exclusion cleanup. Added a bunch of new lineages.