Commits for hiram

v453_base to v454_preview (2023-08-28 to 2023-09-04) v454

a524fbce830be71b5889237f3e68766d33aea9ab Tue Aug 29 12:23:58 2023 -0700

• the CHM13 T2T Chain/Net track should be alpha only no redmine
  • src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra - lines changed 1, context: html, text, full: html, text

4c3e9c5bca8c085e7cb5c7caece08a6ea93222be Tue Aug 29 12:54:45 2023 -0700

• adding new hprc row to grp table refs #31561
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 43, context: html, text, full: html, text

d034e9b946b16c86295130008ec33d457ca45335 Tue Aug 29 13:08:03 2023 -0700

• collecting all the HPRC track experiments into the "hprc" track group refs #31561
  • src/hg/makeDb/trackDb/human/chainNetHuman.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/chainNetHumanExperiment.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/chainsHprc.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/chainsReHprc.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hprc.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hprcArr.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hprcChain.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hprcCoverage.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hprcCoverage97.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/netsReHprc.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.hprc90way.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 20, context: html, text, full: html, text

ac37789fa393ebd3f10312e9cb69965dc756841e Tue Aug 29 14:16:07 2023 -0700

• adding HPRC VCF track refs #31561
  • src/hg/makeDb/trackDb/human/hg38/hprcVCF.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

ea4fde5d4da8107799d542f3a1d7d95797de5097 Tue Aug 29 22:46:16 2023 -0700

• set release alpha for the crisprKmers experiment refs #32048
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text

5d9b2264aab7759c0f58dfaa3ec1523d295eb759 Wed Aug 30 10:42:32 2023 -0700

• fixup release tag issues with include statement to make the tdbQuery -check -release=public -strict "select count(*) from *" >/dev/null be silent no redmine
  • src/hg/makeDb/trackDb/chainNetGCA_009914755.4.trackDb.ra - lines changed 98, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra - lines changed 94, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

33401c5cafc069c3f78bcecc3c0d6f2d0b77aeda Wed Aug 30 14:36:08 2023 -0700

• phyloP done for both all and primates subset refs #31528
  • src/hg/makeDb/doc/hg38/cactus447.txt - lines changed 714, context: html, text, full: html, text

5917d23457a98ec2a907c4538dd64122ba05ccb0 Wed Aug 30 15:07:29 2023 -0700

• now with Primates subset calculation for phyloP refs #31528
  • src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 39, context: html, text, full: html, text

fc8bc86160e4f3e2afb2cd7ef272871b059e75fb Fri Sep 1 15:14:13 2023 -0700

• update with new mammal assemblies refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 12, context: html, text, full: html, text