Commits for braney

v455_preview to v455_preview2 (2023-09-25 to 2023-10-02) v455

aa476446c38237cc1917bbdccf554d89effae119 Mon Sep 25 13:51:10 2023 -0700

• include the preDraw times in the draw times for measureTiming
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

789ad69b3d2a5c937ff33843283ae3ed2a902e12 Mon Sep 25 13:57:16 2023 -0700

• make sure we don't do any prep for drawing sequence logos if we're not at codon level
  • src/hg/hgTracks/wigTrack.c - lines changed 1, context: html, text, full: html, text

5c9078c4286bdfec0fa9d39de2802151a5ac69a8 Thu Sep 28 09:07:58 2023 -0700

• when calculating zoom levels, don't seek on the input if it's already at the beginning of the file. Refs #32293
  • src/lib/bbiWrite.c - lines changed 1, context: html, text, full: html, text

ef80854d868978e0da8e60f4ec0aad06b10f8a82 Thu Sep 28 09:42:31 2023 -0700

• allow bedToBigBed to use compressed input
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 17, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/input/itemRgb.bed.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/utils/bedToBigBed/tests/makefile - lines changed 6, context: html, text, full: html, text

94cb3a8fc27c6d25c975aaaba7d49ce4ca129270 Thu Sep 28 11:32:34 2023 -0700

• Revert "increase maxItemsInFullTrack to 10,000 from 1,000" This reverts commit 003ab3805f814b34afad5ef601beb2caa984d0ca.
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text

4140b3fc69c92c3331daca4f7bf35fafc81a5b1f Thu Sep 28 16:05:26 2023 -0700

• don't check for data accessibility, just trust trackDb Refs #32299
  • src/hg/lib/hdb.c - lines changed 3, context: html, text, full: html, text

dd6685988d7600e805dcf71b943d806dd10289cf Sat Sep 30 17:05:23 2023 -0700

• relax the constraint on sorting for bedToBigBed and bedGraphToBigWig.
  • src/lib/bbiWrite.c - lines changed 19, context: html, text, full: html, text
  • src/utils/bedGraphToBigWig/bedGraphToBigWig.c - lines changed 2, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 2, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/makefile - lines changed 1, context: html, text, full: html, text