Commits for hiram

v455_preview to v455_preview2 (2023-09-25 to 2023-10-02) v455

144a87fa85e631b576be62763fb366648f0de72d Tue Sep 26 15:07:49 2023 -0700

• more VCF files refs #31561
  • src/hg/makeDb/trackDb/human/hg38/hprcVCF.ra - lines changed 40, context: html, text, full: html, text

cddca785f74601253994630b201079246da12acf Wed Sep 27 16:45:19 2023 -0700

• correct phastCons.bw now in gbdb refs @29898
  • src/hg/makeDb/trackDb/human/hg38/trackDb.470way.ra - lines changed 8, context: html, text, full: html, text

dc8a08fcc82b341a89fc2fdc58754f7c0a29ea31 Thu Sep 28 12:09:36 2023 -0700

• update five assemblies refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 2, context: html, text, full: html, text

be4a74e4c1b83140220404396b6e9f945edd8fb2 Thu Sep 28 21:05:25 2023 -0700

• adding two per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 2, context: html, text, full: html, text

18ffabcfa64766bfdd5ba5bfc5d91a6a8b759c74 Thu Sep 28 22:07:37 2023 -0700

• adding a primate per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text

7f3f704f1c57409f82b6a3a13846c562a51be3f0 Sat Sep 30 15:18:22 2023 -0700

• some name updates from Lukas refs #31528
  • src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 1, context: html, text, full: html, text

677db624689ffdfb64899cff55850b1b784b9187 Sun Oct 1 12:44:00 2023 -0700

• including the appropriate html description page refs #31528
  • src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 1, context: html, text, full: html, text

865832763d2228e9a65125606d9d254bd89d9e8a Sun Oct 1 13:04:21 2023 -0700

• get the corrected names next to their counterpart in order refs #31528
  • src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 3, context: html, text, full: html, text

89f815d5f53c0abcad1d2245f2a854cf0fe6e85c Sun Oct 1 13:25:34 2023 -0700

• name changes from Lukas refs #31528
  • src/hg/makeDb/trackDb/human/hg38/cactus447way.html - lines changed 8, context: html, text, full: html, text

cf1ed103bd83b128211aea75b66efa34364a7285 Sun Oct 1 20:55:07 2023 -0700

• coordinate the common name with Lukas recent spreadsheet refs #31528
  • src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 1, context: html, text, full: html, text

c0d666ca90ab648fbc256dec31ebef793795c54a Sun Oct 1 21:52:56 2023 -0700

• correctly named 447-way png image one fourth of the species refs #31528
  • src/hg/htdocs/images/phylo/hg38_447way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

e1aef9187e9d71e1798a071232bf86c1f684f772 Sun Oct 1 21:53:19 2023 -0700

• correctly named 447-way png image one fourth of the species refs #31528
  • src/hg/htdocs/images/phylo/hg38_477way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

f8c6ef44d4ed2ccc9639bfe47f9183df15b4a929 Sun Oct 1 22:03:20 2023 -0700

• remove version comment from phyloFit longLabels refs #31528
  • src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 2, context: html, text, full: html, text

f59854748caf4d0e6e30adfb21a7b8081a6adde2 Mon Oct 2 10:22:16 2023 -0700

• adding the CCGP project
  • src/hg/makeDb/doc/asmHubs/hubIndex.pl - lines changed 5, context: html, text, full: html, text