Commits for lrnassar

v458_preview2 to v458_base (2023-12-04 to 2023-12-11) v458

160c7d0da174bb21094fb458577ed945b70dd9fe Mon Dec 4 12:56:20 2023 -0800

• Fixing some broken outlinks, refs #32668
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 1, context: html, text, full: html, text

845fb03943703bf640cb4f32fdced4c06cf81359 Mon Dec 4 15:08:32 2023 -0800

• Forgot to commit my change for the MANE mouseOver improvement, refs #32459
  • src/hg/makeDb/trackDb/human/hg38/mane.ra - lines changed 1, context: html, text, full: html, text

ee07d5a59eb7fb9bf1062741f44c77388e16c40a Mon Dec 4 15:11:41 2023 -0800

• Restructuring the RefSeqComposite track to be at the mouse and human level so that we can add an override at the hg38/hg19/mm10/mm39 level. The motivation is to have the RefSeq all track on my default for non human and mouse assemblies, but keep only curated for human and mouse. Refs #32716
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 1, context: html, text, full: html, text

df3fa676945f8d8c3765ca2f0393d3fcd0fe55c8 Wed Dec 6 15:29:37 2023 -0800

• Squashing old pennantIcons, no RM.
  • src/hg/makeDb/trackDb/chicken/galGal5/fantom5.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam3/fantom5.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV44lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/problematic.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV44.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM33.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/fantom5.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac8/fantom5.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text