All File Changes

v457_base to v458_preview (2023-11-20 to 2023-11-27) v458

• src/browserbox/root/updateBrowser.sh
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    a6ccb02733b673a4cc4aa1ab14ed5af961593ee7 Wed Nov 22 07:09:15 2023 -0800
    removing OMIM snps from default display on GBIB, refs #32643
• src/hg/das/das.c
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    ad6fa1b977d0deef14f128a3d6f9d14b4b026e3d Wed Nov 22 07:19:50 2023 -0800
    improving DAS help message, no redmine
• src/hg/hgTracks/hgTracks.c
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    b37574e1c170d4303994ac8a3bac774e0f12f5d5 Wed Nov 22 17:28:28 2023 -0800
    be more careful about what we do with composites when hiding all before an RTS load
• src/hg/htdocs/goldenPath/newsarch.html
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    35a8919fea29ca7881ea71382065bddaf5152e68 Wed Nov 22 14:45:36 2023 -0800
    Announcing crispr tracks for danRer10 and danRer11, refs #21863
• src/hg/htdocs/index.html
  • lines changed 6, context: html, text, full: html, text
    4d3b8b4745708e14333be08ed5c5c10fa47793b9 Mon Nov 27 08:47:40 2023 -0800
    Moving the conferences section lower in the page, refs #31573
• src/hg/htdocs/indexMeetings.html
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    d8dc88e168759f53f17cc61981bff3a23d1cec19 Tue Nov 21 10:32:11 2023 -0800
    Fixing the contact us link, refs #32656
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    35a8919fea29ca7881ea71382065bddaf5152e68 Wed Nov 22 14:45:36 2023 -0800
    Announcing crispr tracks for danRer10 and danRer11, refs #21863
• src/hg/inc/bigGenePred.h
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    0ca882d44fa40a7437a84dc68bf0c0774fc23785 Mon Nov 27 09:58:06 2023 -0800
    update autoSql documentation to better describe exonFrames in genePredExt and bigGenePred
• src/hg/inc/genePred.h
  • lines changed 4, context: html, text, full: html, text
    0ca882d44fa40a7437a84dc68bf0c0774fc23785 Mon Nov 27 09:58:06 2023 -0800
    update autoSql documentation to better describe exonFrames in genePredExt and bigGenePred
• src/hg/inc/namedSessionDb.h
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    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/hg/js/hgSearch.js
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    0f6753e2c7738d05fbdd3779329f6ec65542a08b Tue Nov 21 12:42:57 2023 -0800
    Fix show more link text to update correct after showing and then hiding results. Fix show more link to be an href-less anchor so the web browser doesn't jump to the top during a click, refs #31501
• src/hg/lib/bigGenePred.as
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    0ca882d44fa40a7437a84dc68bf0c0774fc23785 Mon Nov 27 09:58:06 2023 -0800
    update autoSql documentation to better describe exonFrames in genePredExt and bigGenePred
• src/hg/lib/genePredExt.as
  • lines changed 1, context: html, text, full: html, text
    0ca882d44fa40a7437a84dc68bf0c0774fc23785 Mon Nov 27 09:58:06 2023 -0800
    update autoSql documentation to better describe exonFrames in genePredExt and bigGenePred
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/hg/lib/namedSessionDb.c
  • lines changed 168, context: html, text, full: html, text
    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/hg/makeDb/doc/asmHubs/master.run.list
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    4d04291fdc353ff88cc07327f20f02fa3c450c17 Mon Nov 27 10:40:56 2023 -0800
    update brings in a couple new assemblies refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
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    4d04291fdc353ff88cc07327f20f02fa3c450c17 Mon Nov 27 10:40:56 2023 -0800
    update brings in a couple new assemblies refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    4d04291fdc353ff88cc07327f20f02fa3c450c17 Mon Nov 27 10:40:56 2023 -0800
    update brings in a couple new assemblies refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
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    eec210b2278f820d9c42a9cb772ed5c00bb0776f Sat Nov 25 21:00:27 2023 -0800
    update moved 10 to legacy
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    0b1005861a01ed3742ad250de0173ace22d408e2 Tue Nov 21 11:33:15 2023 -0800
    Releasing the refseq historical track to hgwbeta, refs #26016
• src/hg/utils/findMissingCts/doCheck
  • lines changed 4, context: html, text, full: html, text
    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/hg/utils/findMissingCts/findMissingCts.c
  • lines changed 113, context: html, text, full: html, text
    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/hg/utils/findMissingCts/makefile
  • lines changed 3, context: html, text, full: html, text
    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
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    677bb75aa7c1cbe71111e1a0ef1462f8277b6c9d Wed Nov 22 10:20:25 2023 -0800
    rescueing YPs back into curated refseq track, refs #32667
• src/inc/portable.h
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    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/lib/osunix.c
  • lines changed 3, context: html, text, full: html, text
    95e9718709993572ff6e85bc7a751e1baa89c26a Mon Nov 20 14:47:56 2023 -0800
    add a utility to count up how many sessions are missing their custom tracks
• src/utils/twoBitToFa/twoBitToFa.c
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    c866d0e97f8b9a2a76593f56ebe5825c9714d7e3 Wed Nov 22 07:15:31 2023 -0800
    documenting twoBitToFa a little better, no redmine, ML ticket with Jacques van Helden

• lines changed: 478
• files changed: 27