Commits for hiram

v460_preview2 to v460_base (2024-01-22 to 2024-01-29) v460

c5434ed7a6bace4f29fcd2de7efc8babb82cf070 Tue Jan 23 10:31:37 2024 -0800

• nine new assemblies from the T2T primates project refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 10, context: html, text, full: html, text

3dbd31c2d1698c2ed69cfac5e8ff12c0b791210d Tue Jan 23 18:16:11 2024 -0800

• adding T2T primate GCA_028858825.2_NHGRI_mPanPan1-v2.0_pat refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text

e0304789c866a4bf80f48372c733f78b2b0ce544 Wed Jan 24 10:08:28 2024 -0800

• three new gorilla assemblies from T2T primates project refs #29545
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 3, context: html, text, full: html, text

c44ff63a8459b35e4ca895eb9d32c3a12b5d7b2e Wed Jan 24 13:18:27 2024 -0800

• final T2T primate assembly GCA_028858845.2_NHGRI_mPanPan1-v2.0_mat refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text

cfe4c0816778b8d58fe613cb8f4d221ca8a4f312 Thu Jan 25 15:28:45 2024 -0800

• spell check refs #32871
  • src/hg/utils/automation/asmHubRmodelJoinAlign.pl - lines changed 1, context: html, text, full: html, text

8dd8b5446255e693537853a18599daf1041ecbf3 Sat Jan 27 08:28:55 2024 -0800

• adding four Oxytricha trigallax and the gigantic European mistletoe refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 1, context: html, text, full: html, text