Commits for braney

v462_base to v463_preview (2024-03-11 to 2024-03-18) v463

8ccceea1c52492b6a869af8de3190a387d4b6550 Tue Mar 12 13:41:09 2024 -0700

• added exportedDataHubs dialog and code to deal with quickLifted hubs
  • src/hg/hgTracks/bigBedTrack.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/exportedDataHubs.c - lines changed 52, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/menu.c - lines changed 11, context: html, text, full: html, text
  • src/hg/hgc/bigBedClick.c - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/exportedDataHubs.h - lines changed 7, context: html, text, full: html, text
  • src/hg/inc/hubConnect.h - lines changed 4, context: html, text, full: html, text
  • src/hg/inc/instaPort.h - lines changed 18, context: html, text, full: html, text
  • src/hg/inc/quickLift.h - lines changed 19, context: html, text, full: html, text
  • src/hg/inc/trackHub.h - lines changed 1, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/exportedDataHubs.as - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/exportedDataHubs.c - lines changed 29, context: html, text, full: html, text
  • src/hg/lib/exportedDataHubs.sql - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 91, context: html, text, full: html, text
  • src/hg/lib/instaPort.c - lines changed 111, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/quickLift.c - lines changed 111, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/makeExportHubs.txt - lines changed 27, context: html, text, full: html, text

9c3e6d832e0b4b881dadc9ad039483f9193d970b Tue Mar 12 13:47:25 2024 -0700

• full definition of exportedDataHubs structure
  • src/hg/inc/exportedDataHubs.h - lines changed 11, context: html, text, full: html, text

72d39449db0b514146be085cd8620740f32b8a5a Tue Mar 12 13:52:10 2024 -0700

• try this again
  • src/hg/inc/exportedDataHubs.h - lines changed 5, context: html, text, full: html, text

a7dd4fa7826142ecfe082ad496d5019effa0c8e6 Wed Mar 13 13:27:35 2024 -0700

• if bigChain trackDb doesn't specify linkDataUrl then try adding .link.bb to the bigDataUrl
  • src/hg/hgTracks/chainTrack.c - lines changed 11, context: html, text, full: html, text

12cb5e1c3222732f385e0509c646b5cd14c53f5c Wed Mar 13 13:29:21 2024 -0700

• another place where we try to find a linkDataUrl if the trackDb doesn't specify it
  • src/hg/hgc/hgc.c - lines changed 12, context: html, text, full: html, text

8e33b480ded84760b7c96de88ab953102fbff466 Fri Mar 15 10:56:11 2024 -0700

• replace code that was potentially allocating too much memory off the stack with memory allocated off the heap and never freed.
  • src/lib/basicBed.c - lines changed 29, context: html, text, full: html, text

7b475d1ee80e5e8725e2caf2b227e81abb413021 Fri Mar 15 13:54:33 2024 -0700

• make maxItemsPossible an hg.conf variable
  • src/hg/hgTracks/simpleTracks.c - lines changed 10, context: html, text, full: html, text

46a8a2fde9e17a401843959b8c0197c95d43ea45 Fri Mar 15 15:54:50 2024 -0700

• add quickLiftover chain to the list of tracks coming from an exported hub
  • src/hg/hgTracks/chainTrack.c - lines changed 54, context: html, text, full: html, text
  • src/hg/inc/trackHub.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 46, context: html, text, full: html, text