Commits for hiram

v467_preview2 to v467_base (2024-06-17 to 2024-06-24) v467

c497641abbae591cc2dc13cf184c5e13fa58b6b1 Mon Jun 17 12:51:42 2024 -0700

• add genArkHubTxt() function to contruct the hub.txt URL from a GCx_ name no redmine
  • src/hg/inc/genark.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/genark.c - lines changed 24, context: html, text, full: html, text

afd7d0d912aa376f0f214448f3e83d5967f35d50 Mon Jun 17 12:55:03 2024 -0700

• allow list functions to work on a genark genome without hubUrl specified no redmine
  • src/hg/hubApi/list.c - lines changed 15, context: html, text, full: html, text
  • src/hg/hubApi/tests/expected/list28.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/list29.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/list30.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/list31.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/list32.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 32, context: html, text, full: html, text

0969409c52a6e1f50cc34ede97ee87fcd897200e Mon Jun 17 13:18:27 2024 -0700

• allow the same trick for getData functions genArk genome name without URL will work no redmine
  • src/hg/hubApi/getData.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hubApi/list.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test58.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test59.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 15, context: html, text, full: html, text

a5900a426956aeb7826939703cc5e265330725cb Fri Jun 21 12:16:52 2024 -0700

• adding GCA_921999865.2_C57BL_6NJ_v3 per user request refs #33195
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 2, context: html, text, full: html, text