File Changes for hiram

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v467_preview to v467_preview2 (2024-06-10 to 2024-06-17) v467

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src/hg/hubApi/apiUtils.c
- lines changed 3, context: html, text, full: html, text
  efe42f68b1889404cfa56bbc020c273ebdb5fc8d Wed Jun 12 12:05:02 2024 -0700
  now supporting bigDbSnp bigMaf and bigChain refs #24430
- lines changed 40, context: html, text, full: html, text
  3ccd2b6675cc1955d74aec568ef2fdc852bd3fd7 Fri Jun 14 12:12:57 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
src/hg/hubApi/dataApi.h
- lines changed 8, context: html, text, full: html, text
  3ccd2b6675cc1955d74aec568ef2fdc852bd3fd7 Fri Jun 14 12:12:57 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
- lines changed 1, context: html, text, full: html, text
  ee5f1773270f1662bbea9a28017cf88080e40793 Fri Jun 14 13:28:36 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/hubApi/getData.c
- lines changed 24, context: html, text, full: html, text
  ee5f1773270f1662bbea9a28017cf88080e40793 Fri Jun 14 13:28:36 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/hubApi/hubApi.c
- lines changed 11, context: html, text, full: html, text
  2ea6e837990eb39bc317f2b1aacacfe4ff77a7ce Tue Jun 11 18:00:29 2024 -0700
  correctly check boolean CGI variable and ouput the tracks in a single file track hub while in html mode no redmine
- lines changed 21, context: html, text, full: html, text
  efe42f68b1889404cfa56bbc020c273ebdb5fc8d Wed Jun 12 12:05:02 2024 -0700
  now supporting bigDbSnp bigMaf and bigChain refs #24430
- lines changed 2, context: html, text, full: html, text
  628a3a8a4dd8529eb3ab160d67f934da6595ebdb Wed Jun 12 14:26:58 2024 -0700
  display the source version in the html page title refs #24430
- lines changed 1, context: html, text, full: html, text
  3ccd2b6675cc1955d74aec568ef2fdc852bd3fd7 Fri Jun 14 12:12:57 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
- lines changed 1, context: html, text, full: html, text
  ee5f1773270f1662bbea9a28017cf88080e40793 Fri Jun 14 13:28:36 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/hubApi/list.c
- lines changed 64, context: html, text, full: html, text
  3ccd2b6675cc1955d74aec568ef2fdc852bd3fd7 Fri Jun 14 12:12:57 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
src/hg/hubApi/tests/expected/bigChain.gz
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  2561e20e2d24e53c562c67c64adc01e19a44f7cb Wed Jun 12 15:00:00 2024 -0700
  adding tests for bigDbSnp bigMaf and bigChain refs #24430
- lines changed 0, context: html, text, full: html, text
  b538830cb5a8eb5ffce539343a863b2a1bf4df08 Wed Jun 12 15:14:15 2024 -0700
  correct bigChain example refs #24430
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  57be7c2fe6ad00cc149bce423c6050b0aee877d8 Wed Jun 12 15:33:06 2024 -0700
  correctly eliminate the server for the results compare refs #24430
src/hg/hubApi/tests/expected/bigDbSnp.gz
- lines changed 0, context: html, text, full: html, text
  2561e20e2d24e53c562c67c64adc01e19a44f7cb Wed Jun 12 15:00:00 2024 -0700
  adding tests for bigDbSnp bigMaf and bigChain refs #24430
- lines changed 0, context: html, text, full: html, text
  57be7c2fe6ad00cc149bce423c6050b0aee877d8 Wed Jun 12 15:33:06 2024 -0700
  correctly eliminate the server for the results compare refs #24430
src/hg/hubApi/tests/expected/bigMaf.gz
- lines changed 0, context: html, text, full: html, text
  2561e20e2d24e53c562c67c64adc01e19a44f7cb Wed Jun 12 15:00:00 2024 -0700
  adding tests for bigDbSnp bigMaf and bigChain refs #24430
- lines changed 0, context: html, text, full: html, text
  57be7c2fe6ad00cc149bce423c6050b0aee877d8 Wed Jun 12 15:33:06 2024 -0700
  correctly eliminate the server for the results compare refs #24430
src/hg/hubApi/tests/expected/getSeq06.gz
- lines changed 0, context: html, text, full: html, text
  87ec277a5cc1915db16b58a4107b7a39e7a5da70 Fri Jun 14 13:34:16 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/hubApi/tests/expected/getSeq07.gz
- lines changed 0, context: html, text, full: html, text
  87ec277a5cc1915db16b58a4107b7a39e7a5da70 Fri Jun 14 13:34:16 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/hubApi/tests/expected/list20.gz
- lines changed 0, context: html, text, full: html, text
  188036292f01c867ee6ba195e919c6b91071592e Wed Jun 12 12:03:30 2024 -0700
  updated expected results for api test refs #24430
src/hg/hubApi/tests/expected/list22.gz
- lines changed 0, context: html, text, full: html, text
  188036292f01c867ee6ba195e919c6b91071592e Wed Jun 12 12:03:30 2024 -0700
  updated expected results for api test refs #24430
src/hg/hubApi/tests/expected/list23.gz
- lines changed 0, context: html, text, full: html, text
  188036292f01c867ee6ba195e919c6b91071592e Wed Jun 12 12:03:30 2024 -0700
  updated expected results for api test refs #24430
src/hg/hubApi/tests/expected/list26.gz
- lines changed 0, context: html, text, full: html, text
  d4f37ab805653c217758293128fe54557f4ec370 Fri Jun 14 12:13:51 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
src/hg/hubApi/tests/expected/list27.gz
- lines changed 0, context: html, text, full: html, text
  d4f37ab805653c217758293128fe54557f4ec370 Fri Jun 14 12:13:51 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
src/hg/hubApi/tests/expected/test0.gz
- lines changed 0, context: html, text, full: html, text
  188036292f01c867ee6ba195e919c6b91071592e Wed Jun 12 12:03:30 2024 -0700
  updated expected results for api test refs #24430
src/hg/hubApi/tests/expected/test41.gz
- lines changed 0, context: html, text, full: html, text
  188036292f01c867ee6ba195e919c6b91071592e Wed Jun 12 12:03:30 2024 -0700
  updated expected results for api test refs #24430
src/hg/hubApi/tests/jsonConsumer.pl
- lines changed 9, context: html, text, full: html, text
  9512d9e92adf96a6e857ebad9385420a131b41a0 Fri Jun 14 12:19:11 2024 -0700
  correctly form URL when no standard arguments refs #23589
- lines changed 3, context: html, text, full: html, text
  2f5ab86dbe1725b58789a00b199c64e0a68b2cff Fri Jun 14 13:35:06 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/hubApi/tests/makefile
- lines changed 44, context: html, text, full: html, text
  2561e20e2d24e53c562c67c64adc01e19a44f7cb Wed Jun 12 15:00:00 2024 -0700
  adding tests for bigDbSnp bigMaf and bigChain refs #24430
- lines changed 8, context: html, text, full: html, text
  1fa309a4080795a05783d3255631e8991eb18e04 Wed Jun 12 15:14:52 2024 -0700
  correct bigChain example refs #24430
- lines changed 6, context: html, text, full: html, text
  57be7c2fe6ad00cc149bce423c6050b0aee877d8 Wed Jun 12 15:33:06 2024 -0700
  correctly eliminate the server for the results compare refs #24430
- lines changed 13, context: html, text, full: html, text
  d4f37ab805653c217758293128fe54557f4ec370 Fri Jun 14 12:13:51 2024 -0700
  adding a /list/genarkGenomes endpoint refs #23589
- lines changed 12, context: html, text, full: html, text
  87ec277a5cc1915db16b58a4107b7a39e7a5da70 Fri Jun 14 13:34:16 2024 -0700
  add new option to getSeq -revComp to reverse complement sequence output refs #26691
src/hg/makeDb/doc/asmHubs/commonNames.pl
- lines changed 6, context: html, text, full: html, text
  001fb580a2cea33c231639073694e698dbb49a09 Mon Jun 10 11:48:35 2024 -0700
  manage the general name of bony fish, eudicots birds snakes bats refs #29545
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 17, context: html, text, full: html, text
  a430f85c0f9ce1dab0605b6baf041660c6cade4c Mon Jun 10 15:25:46 2024 -0700
  VGP alternate update adding 17 assemblies refs #20545
src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
- lines changed 5, context: html, text, full: html, text
  a430f85c0f9ce1dab0605b6baf041660c6cade4c Mon Jun 10 15:25:46 2024 -0700
  VGP alternate update adding 17 assemblies refs #20545
src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  a430f85c0f9ce1dab0605b6baf041660c6cade4c Mon Jun 10 15:25:46 2024 -0700
  VGP alternate update adding 17 assemblies refs #20545
src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
- lines changed 6, context: html, text, full: html, text
  a430f85c0f9ce1dab0605b6baf041660c6cade4c Mon Jun 10 15:25:46 2024 -0700
  VGP alternate update adding 17 assemblies refs #20545
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 5, context: html, text, full: html, text
  a430f85c0f9ce1dab0605b6baf041660c6cade4c Mon Jun 10 15:25:46 2024 -0700
  VGP alternate update adding 17 assemblies refs #20545
src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
- lines changed 18, context: html, text, full: html, text
  ce4c9616023304d8f391945196866c465c054fb5 Wed Jun 12 20:17:42 2024 -0700
  updating 17 for VGP alternate
src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
- lines changed 17, context: html, text, full: html, text
  ce4c9616023304d8f391945196866c465c054fb5 Wed Jun 12 20:17:42 2024 -0700
  updating 17 for VGP alternate
src/hg/utils/automation/doSimpleRepeat.pl
- lines changed 4, context: html, text, full: html, text
  405a64d015eb7dd55a4bbfb533f463f7b9a4c23c Tue Jun 11 10:32:25 2024 -0700
  prevent this procedure from running on top of an existing process no redmine

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