File Changes for hiram

v468_base to v469_preview (2024-07-15 to 2024-07-22) v469

• src/hg/hubApi/assemblyList.py
  • lines changed 766, context: html, text, full: html, text
    455920818135586578c0382cf43a165aaafdcb8e Fri Jul 19 11:09:42 2024 -0700
    transition the prototype genomePriority.py to this production script to be used by otto cronjob refs #33720
• src/hg/hubApi/genomePriority.py
  • lines changed 1, context: html, text, full: html, text
    f0b12c9e7b7a5311f66cce4a76aeac3837003ecd Mon Jul 15 11:31:47 2024 -0700
    correctly compare database version numbers refs #33720
  • lines changed 33, context: html, text, full: html, text
    2d41a88dd1243e8aa51f32e001a80a529c40ea4a Thu Jul 18 13:41:34 2024 -0700
    adding hubUrl to the table ready for transition to assemblyList.py refs #33720
• src/hg/inc/assemblyList.h
  • lines changed 89, context: html, text, full: html, text
    2390b3f3a5623be111160d4f96fc6ea4c197ca4a Fri Jul 19 11:12:57 2024 -0700
    assemblyList table definition for gateway search and findGenome API functions refs #33720
• src/hg/lib/assemblyList.as
  • lines changed 13, context: html, text, full: html, text
    2390b3f3a5623be111160d4f96fc6ea4c197ca4a Fri Jul 19 11:12:57 2024 -0700
    assemblyList table definition for gateway search and findGenome API functions refs #33720
• src/hg/lib/assemblyList.c
  • lines changed 332, context: html, text, full: html, text
    2390b3f3a5623be111160d4f96fc6ea4c197ca4a Fri Jul 19 11:12:57 2024 -0700
    assemblyList table definition for gateway search and findGenome API functions refs #33720
• src/hg/lib/assemblyList.sql
  • lines changed 20, context: html, text, full: html, text
    2390b3f3a5623be111160d4f96fc6ea4c197ca4a Fri Jul 19 11:12:57 2024 -0700
    assemblyList table definition for gateway search and findGenome API functions refs #33720
• src/hg/makeDb/doc/asmHubs/commonNames.pl
  • lines changed 1, context: html, text, full: html, text
    9d98499c2484b4bb31788c4e20d9c145c2a6ae92 Thu Jul 18 14:10:32 2024 -0700
    eliminate the useless "Organism name:" from the common name string refs #33720
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 18, context: html, text, full: html, text
    582bbd0a6f94ec0d8d4778f2ee90bdd4189e3c3e Tue Jul 16 16:50:27 2024 -0700
    update adding some fungi and invertebrate assemblies refs #29545
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 15, context: html, text, full: html, text
    582bbd0a6f94ec0d8d4778f2ee90bdd4189e3c3e Tue Jul 16 16:50:27 2024 -0700
    update adding some fungi and invertebrate assemblies refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    582bbd0a6f94ec0d8d4778f2ee90bdd4189e3c3e Tue Jul 16 16:50:27 2024 -0700
    update adding some fungi and invertebrate assemblies refs #29545
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    d43a914eeea67fcf8ea14745e1932859a263c111 Tue Jul 16 19:55:45 2024 -0700
    remove include refSeqComposite.ra from higher level definitions refs #34008
  • lines changed 30, context: html, text, full: html, text
    55cdc0578ebe3463380c79c1913c8386e80856f9 Tue Jul 16 19:58:50 2024 -0700
    remove include refSeqComposite.ra from higher level definitions refs #34008
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    d43a914eeea67fcf8ea14745e1932859a263c111 Tue Jul 16 19:55:45 2024 -0700
    remove include refSeqComposite.ra from higher level definitions refs #34008
  • lines changed 12, context: html, text, full: html, text
    55cdc0578ebe3463380c79c1913c8386e80856f9 Tue Jul 16 19:58:50 2024 -0700
    remove include refSeqComposite.ra from higher level definitions refs #34008