File Changes for markd

v475_preview2 to v475_base (2024-12-02 to 2024-12-09) v475

• src/hg/makeDb/trackDb/chainNet.html
  • lines changed 5, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/chicken/galGal6/chainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/drosophila/dm6/chainNetInsects.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/altSeqComposite.html
  • lines changed 13, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/hg19/hg19ChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/hg38/hg38primateChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/hg38/t2tChain.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/homoSapiensChainNet.html
  • lines changed 5, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/placentalChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/primateChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/human/vertebrateChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/humanChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/mouse/altSeqComposite.html
  • lines changed 13, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/mouse/mm10/chainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/mouse/mm10/mm10Strains1.html
  • lines changed 11, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/mouse/mm10/vertebrateChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/rat/rn6/ratChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/worm/ce11/chainNetNematodes.html
  • lines changed 13, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/makeDb/trackDb/zebrafish/danRer7/danRer7multipleChainNet.html
  • lines changed 12, context: html, text, full: html, text
    5fc81fc9aeef72ee718678ce93da39337b2db6fe Tue Dec 3 19:50:33 2024 -0800
    fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references
• src/hg/utils/bedPartition/bedPartition.c
  • lines changed 22, context: html, text, full: html, text
    0d573301aec0beac41da09b0152c5e74fbe7f2f2 Sun Dec 8 10:16:19 2024 -0800
    Add generate name to output partation BEDs. Remove -partSize, which made no sense to just group by number of partations. It is replaced by -partMergeSize, to allow for merging partations within a certain distance
• src/hg/utils/bedPartition/tests/expected/test1.ranges.bed
  • lines changed 6, context: html, text, full: html, text
    0d573301aec0beac41da09b0152c5e74fbe7f2f2 Sun Dec 8 10:16:19 2024 -0800
    Add generate name to output partation BEDs. Remove -partSize, which made no sense to just group by number of partations. It is replaced by -partMergeSize, to allow for merging partations within a certain distance
• src/hg/utils/bedPartition/tests/expected/test2.ranges.bed
  • lines changed 4, context: html, text, full: html, text
    0d573301aec0beac41da09b0152c5e74fbe7f2f2 Sun Dec 8 10:16:19 2024 -0800
    Add generate name to output partation BEDs. Remove -partSize, which made no sense to just group by number of partations. It is replaced by -partMergeSize, to allow for merging partations within a certain distance
• src/hg/utils/bedPartition/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    0d573301aec0beac41da09b0152c5e74fbe7f2f2 Sun Dec 8 10:16:19 2024 -0800
    Add generate name to output partation BEDs. Remove -partSize, which made no sense to just group by number of partations. It is replaced by -partMergeSize, to allow for merging partations within a certain distance