Commits for hiram

v476_preview to v476_preview2 (2024-12-16 to 2025-01-06) v476

1891633f3daf8ca3fb2342cb421b46bcdb68feec Fri Dec 13 11:46:42 2024 -0800

• fix spelling of trackDb variable refs #34370
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 2, context: html, text, full: html, text

9ed9912f5703b6ba1c660fc9702b0d8d61358ee6 Thu Dec 19 14:20:13 2024 -0800

• helper script to manage clades refs #34370
  • src/hg/makeDb/doc/asmHubs/cladeListings.sh - lines changed 26, context: html, text, full: html, text

fd35b9a0e11c4bd917246480cc542e1b58e60ebe Thu Dec 19 14:22:23 2024 -0800

• fixup a common name refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text

ebd67b0a1ea3e1fdf5cd5d1ef7d9e3a618c25169 Thu Dec 19 17:46:25 2024 -0800

• Mac OSX needs O_NONBLOCK instead of SOCK_NONBLOCK no redmine
  • src/lib/https.c - lines changed 4, context: html, text, full: html, text

8dea55f517c6b7ebfd2e39e93a8294d65b270f47 Mon Dec 30 06:06:04 2024 -0800

• adding official cytoBand from NCBI refs #35007
  • src/hg/makeDb/doc/mm39/initialBuild.txt - lines changed 67, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/cytoBand.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 2, context: html, text, full: html, text

59c5d74bd333b5e2a11b22f1bb29f512a6eb9c7a Thu Jan 2 17:37:11 2025 -0800

• ifdef the code for the ArraySize macro so the older compiler will see what it usually sees and the new one sees what it wants - TO BE FIXED - eventually refs #34990
  • src/inc/common.h - lines changed 8, context: html, text, full: html, text

fc1c3661b9fb623c6d87e635a4825ebc24947b26 Thu Jan 2 18:26:27 2025 -0800

• the new compiler needs the pragma, mistake to comment it out refs #34990
  • src/inc/common.h - lines changed 1, context: html, text, full: html, text

b86a64d107e037d0af2f13748f591a6e746c5e6d Sun Jan 5 11:51:55 2025 -0800

• trying a cytoBand track with index - does not seem to index refs #35007
  • src/hg/makeDb/trackDb/mouse/mm39/cytoBand.ra - lines changed 9, context: html, text, full: html, text

a67466b94ea03dd7890183553292999d10197f30 Mon Jan 6 12:01:26 2025 -0800

• fix segfault error on missing -motif argument no redmine
  • src/utils/findMotif/findMotif.c - lines changed 3, context: html, text, full: html, text