Commits for hiram

v480_preview2 to v480_base (2025-03-31 to 2025-04-07) v480

c85c734dd97a76942a9f73af2b37d4ad526203c2 Wed Apr 2 16:56:00 2025 -0700

• VGP update refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 43, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 10, context: html, text, full: html, text

49d34002ae6baa02bb112d539e4e2995e455f088 Fri Apr 4 01:52:38 2025 -0700

• VGP update adding a couple refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 2, context: html, text, full: html, text

30a730a1899e9687cfd677f9f3bb4fd705309d3b Sat Apr 5 07:53:28 2025 -0700

• VGP update adding some mammals refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 5, context: html, text, full: html, text

f98767fe73fb191bc64ca09b97b947a740c94645 Sun Apr 6 18:46:35 2025 -0700

• BRC update adding 122 virus genomes refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 122, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 130, context: html, text, full: html, text

f9604ebe649761abff816536cc309d813b32bc34 Sun Apr 6 21:57:55 2025 -0700

• script running on the hgdownload machines to general file list of all GenArk hub files on hgdownload no redmine
  • src/hg/makeDb/doc/asmHubs/genArkFileList.sh - lines changed 23, context: html, text, full: html, text

f7738bbbaf7e4795de4aca61f476d1ddfe127e21 Sun Apr 6 22:00:59 2025 -0700

• reset scripts to function on hgdownload3 no redmine
  • src/hg/makeDb/doc/asmHubs/asmHubList.pl - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/asmHubs/hubIndex.pl - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/asmHubs/hubList.sh - lines changed 41, context: html, text, full: html, text