All File Changes

v480_preview to v480_preview2 (2025-03-24 to 2025-03-31) v480

• confs/hgwdev.hg.conf
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    5d38274cefec7488457179eed5134c6407fd2fd1 Sun Mar 30 01:11:15 2025 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cirm/cdw/cdwMakeEnrichments/cdwMakeEnrichments.c
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    8bd821162ab03e746058895b7347410089292e56 Tue Mar 25 14:04:19 2025 -0700
    Adding xlsx to SSPsyGene format for new extended Hoffman dataset
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    785dd09a1e759574be2d6e8235a009bea57525ce Tue Mar 25 14:16:58 2025 -0700
    Adding txt to SSPsyGene format for new extended Hoffman dataset
• src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c
  • lines changed 4, context: html, text, full: html, text
    8bd821162ab03e746058895b7347410089292e56 Tue Mar 25 14:04:19 2025 -0700
    Adding xlsx to SSPsyGene format for new extended Hoffman dataset
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    785dd09a1e759574be2d6e8235a009bea57525ce Tue Mar 25 14:16:58 2025 -0700
    Adding txt to SSPsyGene format for new extended Hoffman dataset
• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
  • lines changed 1, context: html, text, full: html, text
    8bd821162ab03e746058895b7347410089292e56 Tue Mar 25 14:04:19 2025 -0700
    Adding xlsx to SSPsyGene format for new extended Hoffman dataset
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    785dd09a1e759574be2d6e8235a009bea57525ce Tue Mar 25 14:16:58 2025 -0700
    Adding txt to SSPsyGene format for new extended Hoffman dataset
• src/hg/hgCollection/hgCollection.c
  • lines changed 6, context: html, text, full: html, text
    eba19988788a49d5715af0ff728b19f12ee30a69 Fri Mar 28 12:22:23 2025 -0700
    require users be logged in to edit collections
• src/hg/hgHubConnect/hooks/makefile
  • lines changed 34, context: html, text, full: html, text
    d4b3318b18e4bbabc0bd6666bae82016cc8fae5e Mon Mar 24 14:57:31 2025 -0700
    Make hubspace hooks get into the loader directory automatically, refs #31058
• src/hg/hgTracks/bigWigTrack.c
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    eab3f6024915a08ebe1cce08017271d4a6b142d5 Fri Mar 28 11:27:14 2025 -0700
    draw quickLift lines for indels, make quickLift bigBed querying smarter about padding
• src/hg/hgTracks/heatmap.c
  • lines changed 185, context: html, text, full: html, text
    cfad5f46e806d68168b04dad2891310a6c2dc8d6 Mon Mar 31 09:10:05 2025 -0700
    More feature complete heatmaps (figure legend, color options), refs #31812
• src/hg/hgTracks/heatmap.h
  • lines changed 12, context: html, text, full: html, text
    cfad5f46e806d68168b04dad2891310a6c2dc8d6 Mon Mar 31 09:10:05 2025 -0700
    More feature complete heatmaps (figure legend, color options), refs #31812
• src/hg/hgTracks/hgTracks.h
  • lines changed 5, context: html, text, full: html, text
    eab3f6024915a08ebe1cce08017271d4a6b142d5 Fri Mar 28 11:27:14 2025 -0700
    draw quickLift lines for indels, make quickLift bigBed querying smarter about padding
• src/hg/hgTracks/interactTrack.c
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    1a780d1afe8917fe305f89a178e97fa94e9c222a Tue Mar 25 12:38:13 2025 -0700
    Forgot to remove commented out code, refs #30380
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    1da10945502204574470299154d4e6706c231b4f Mon Mar 31 10:35:45 2025 -0700
    Interact UI has a checkbox to disable the details boxes on interaction lines, refs #30380
• src/hg/hgTracks/makefile
  • lines changed 1, context: html, text, full: html, text
    eab3f6024915a08ebe1cce08017271d4a6b142d5 Fri Mar 28 11:27:14 2025 -0700
    draw quickLift lines for indels, make quickLift bigBed querying smarter about padding
• src/hg/hgTracks/quickLift.c
  • lines changed 118, context: html, text, full: html, text
    eab3f6024915a08ebe1cce08017271d4a6b142d5 Fri Mar 28 11:27:14 2025 -0700
    draw quickLift lines for indels, make quickLift bigBed querying smarter about padding
• src/hg/hgTracks/simpleTracks.c
  • lines changed 2, context: html, text, full: html, text
    eab3f6024915a08ebe1cce08017271d4a6b142d5 Fri Mar 28 11:27:14 2025 -0700
    draw quickLift lines for indels, make quickLift bigBed querying smarter about padding
• src/hg/hgc/peakClusters.c
  • lines changed 1, context: html, text, full: html, text
    4e0da085b552182bc4dcfb66827c2e01792eadec Fri Mar 28 13:26:25 2025 -0700
    stop freeing memory that hasn't been allocated refs #35452
• src/hg/htdocs/contacts.html
  • lines changed 5, context: html, text, full: html, text
    ed81f283e769571d3fb71e43f04ac5b8abc2abad Fri Mar 28 16:41:28 2025 -0700
    Removing the kent email to push traffic to the more informative kent informatics site. No RM.
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 2, context: html, text, full: html, text
    741e41664e98abfe78e58fa8fa725e77f8cb0544 Mon Mar 31 10:47:41 2025 -0700
    trackDb doc for new interact track setting 'detailsBoxesEnabled', refs #30380
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 2, context: html, text, full: html, text
    741e41664e98abfe78e58fa8fa725e77f8cb0544 Mon Mar 31 10:47:41 2025 -0700
    trackDb doc for new interact track setting 'detailsBoxesEnabled', refs #30380
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 5, context: html, text, full: html, text
    741e41664e98abfe78e58fa8fa725e77f8cb0544 Mon Mar 31 10:47:41 2025 -0700
    trackDb doc for new interact track setting 'detailsBoxesEnabled', refs #30380
• src/hg/hubApi/apiUtils.c
  • lines changed 7, context: html, text, full: html, text
    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/list.c
  • lines changed 16, context: html, text, full: html, text
    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/altGraphX.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/barChart.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/bigChain.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/bigDbSnp.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/bigMaf.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chain.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias01.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias02.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias03.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias04.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias05.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias06.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias07.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias08.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias09.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias10.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/chrAlias11.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/ctgPos.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err01.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err02.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err03.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err04.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err05.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err06.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err07.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err08.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err09.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err10.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err11.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err12.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err13.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err14.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err15.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err16.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err17.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err18.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err19.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err20.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err21.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err22.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err23.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err24.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err25.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err26.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err27.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err28.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err29.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err30.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err31.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err32.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err33.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err34.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err35.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err36.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err37.gz
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    f9f813c4330857fed2ed6008e6d6e9eb54d2474a Fri Mar 28 04:51:53 2025 -0700
    fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947
• src/hg/hubApi/tests/expected/err38.gz
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• src/hg/makeDb/doc/mm39/lastzRuns.txt
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    7d0bd2b7d089f94c9a8260c417246d4dbfce2523 Sat Mar 29 18:51:22 2025 -0700
    adding make docs for several lastz runs from the last 6 months or so
• src/hg/makeDb/doc/rheMac10/lastzRuns.txt
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    7d0bd2b7d089f94c9a8260c417246d4dbfce2523 Sat Mar 29 18:51:22 2025 -0700
    adding make docs for several lastz runs from the last 6 months or so
• src/hg/makeDb/trackDb/human/hg38/knownGene.nmd_deco.ra
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    3d9e2672e5ec7f4b0083fb70f6009ce91c5ec64e Mon Mar 24 17:16:20 2025 -0700
    Hiding non-default tracks on hgwdev, No RM
• src/hg/makeDb/trackDb/human/hg38/mane.ra
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    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/human/hg38/primates11way.ra
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    3d9e2672e5ec7f4b0083fb70f6009ce91c5ec64e Mon Mar 24 17:16:20 2025 -0700
    Hiding non-default tracks on hgwdev, No RM
• src/hg/makeDb/trackDb/human/hg38/pseudogenes.html
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    688f9532492ebea4e30105b72299526309344aaf Tue Mar 25 18:16:57 2025 -0700
    Updating the Pseudogenes and Parents trackDb settings and track description page, refs #30563
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    0b6c75b2d7676b1eb3833482b047e6be5a2be6fa Wed Mar 26 12:21:58 2025 -0700
    More updates to the Pseudogenes and Parents track description page, refs #30563
• src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra
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    688f9532492ebea4e30105b72299526309344aaf Tue Mar 25 18:16:57 2025 -0700
    Updating the Pseudogenes and Parents trackDb settings and track description page, refs #30563
• src/hg/makeDb/trackDb/patchTracks.new.ra
  • lines changed 47, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/patchTracks.ra
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    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/patchesPsl.html
  • lines changed 57, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/trackDb.ra
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    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/inc/cgiLoader.mk
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    d4b3318b18e4bbabc0bd6666bae82016cc8fae5e Mon Mar 24 14:57:31 2025 -0700
    Make hubspace hooks get into the loader directory automatically, refs #31058
• src/inc/cgiVars.mk
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    d4b3318b18e4bbabc0bd6666bae82016cc8fae5e Mon Mar 24 14:57:31 2025 -0700
    Make hubspace hooks get into the loader directory automatically, refs #31058
• src/lib/asParse.c
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    b5a09059aadfa4868406131645655f4807460198 Mon Mar 24 22:01:37 2025 -0700
    If .as variables can start with an underscore, then we need to accept them as valid variable names when defining autosql arrays, refs #31812
• src/utils/qa/assemblyStatsCron.py
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    dd0dcde4d9c1dd587b2988ec90e960c4685c8c92 Tue Mar 25 20:24:46 2025 -0700
    Added a column to report what % of the total database usage each one of them is. No RM.
• src/utils/qa/hgTracksTiming.py
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    8c8dd4c005adb96dd72d52450592056655780ee7 Mon Mar 24 16:52:08 2025 -0700
    Fixing one big problem: I was not going through the 'all history' loop at all due to incorrect variables. And the second change is an improvement to the 20h and all time logic, now it takes the average of the values in that range instead of one discreet data point, refs #32284
• src/utils/qa/pairLastzWrapper.py
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    e0df390fc7750251ab187beaf5523ae529e6a30f Sat Mar 29 16:13:43 2025 -0700
    Fixing SyntaxWarning: invalid escape sequence '\G' by doubling '\G', No RM
• src/utils/qa/qaTestScript.py
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    f0db2636446fe8bdefc97f419ff28432da450d84 Wed Mar 26 14:09:03 2025 -0700
    Adding a test for a split table (mm10 intronEst table) on the Table Browser, refs #17985
• src/utils/qa/weeklybld/buildEnv.csh
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    2158d8a8f436b84eb11caae50ae3c26ae24a4f3f Mon Mar 31 10:53:31 2025 -0700
    v480 preview2, refs #35440
• src/utils/qa/weeklybld/buildHgCentralSql.csh
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    6c20c05a0c8d5230186597d536df8886a42a5dfe Wed Mar 26 16:07:09 2025 -0700
    hgdownload2 is back out of commission, no ticket
• src/utils/qa/weeklybld/checkLogins.sh
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    6c20c05a0c8d5230186597d536df8886a42a5dfe Wed Mar 26 16:07:09 2025 -0700
    hgdownload2 is back out of commission, no ticket
• src/utils/qa/weeklybld/doZip.csh
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    6c20c05a0c8d5230186597d536df8886a42a5dfe Wed Mar 26 16:07:09 2025 -0700
    hgdownload2 is back out of commission, no ticket
• src/utils/qa/weeklybld/makeUserApps.csh
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    6c20c05a0c8d5230186597d536df8886a42a5dfe Wed Mar 26 16:07:09 2025 -0700
    hgdownload2 is back out of commission, no ticket
• src/utils/qa/weeklybld/userApps.sh
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    6c20c05a0c8d5230186597d536df8886a42a5dfe Wed Mar 26 16:07:09 2025 -0700
    hgdownload2 is back out of commission, no ticket

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• files changed: 262