Commits for mspeir

v492_base to v493_preview (2025-12-15 to 2026-01-12) v493

fb0974b26c4adb2ed270215ee30899f13a5fced4 Thu Dec 18 16:41:37 2025 -0800

• adding announcement for ancient hominids tracks, refs #36586
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 22, context: html, text, full: html, text
  • src/hg/htdocs/images/newsArchImages/ancientHominids.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

7151483319835fd736f3fbe0966c8f1476298d04 Tue Dec 23 12:36:27 2025 -0800

• correcting title for ancient hominids announcement, adding link to announcement from home page, refs #36586
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

3bcdba0cb7f7281dc131c2c59684980741a841e6 Tue Dec 23 15:34:36 2025 -0800

• Adding better description of species coloring in conservation tracks, refs #27217
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons46way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons100way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons17way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons20way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons241way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons27way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons30way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons470way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons4way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons5way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/cons4way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/cons35way.html - lines changed 2, context: html, text, full: html, text

7a820a27de93e79180f99ae0e149585b5d1bb126 Tue Dec 23 16:02:10 2025 -0800

• adding better species coloring description to rest of conservation tracks, refs #27217
  • src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/cons3way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat4/cons6way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal6/cons77way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro3/cons12way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau4/multiz5way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/criGri/regenCho1/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/cons124way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/cons27way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/galVar/galVar1/cons4way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/galVar/galVar1/cons5way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/galVar/galVar1/cons6way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/cavPor3/cons5way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/cavPor3/cons6way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab2/multiz6way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cons44way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/multiz28way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/petMar2/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/braFlo1/multiz5way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar2/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac1/multiz9way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/cons13way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/cons30way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/multiz30way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur3/cons3way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/multiz8way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/regenRn1/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/cons13way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/cons20way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer3/multiz7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/cons17way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/cons20way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/tupChi1/cons4way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/tupChi1/cons5way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/cons119way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/cons44way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce10/cons7way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce10/cons9way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce11/cons135way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce11/cons26way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce9/cons10way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro9/cons11way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer10/cons12way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer6/multiz6way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer7/cons8way.html - lines changed 2, context: html, text, full: html, text

c7c977ef035c3ea2a45e3394f5d0fe9c1ed0739b Wed Dec 24 10:56:26 2025 -0800

• adding bulleted list of ra stanza specification, refs #35619
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html - lines changed 20, context: html, text, full: html, text

2ab535c78777f5b40d7436c9cd573ef8dfae9052 Wed Dec 31 14:50:40 2025 -0800

• replacing quick start link with link to hub basics page, refs #28347
  • src/hg/htdocs/inc/hgMyData.html - lines changed 1, context: html, text, full: html, text

747ceb988787624f37b1243a09bf6905e3ae981e Wed Jan 7 10:31:14 2026 -0800

• removing list22 test since it changes frequently, refs #36463
  • src/hg/hubApi/tests/makefile - lines changed 5, context: html, text, full: html, text

4a87b1269ea7ed40e2904c15bafda61f62d4f567 Wed Jan 7 11:33:28 2026 -0800

• Adding information about include statements to hub docs, refs #20909
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 44, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html - lines changed 7, context: html, text, full: html, text