File Changes for gperez2

v499_preview to v499_preview2 (2026-05-18 to 2026-05-25) v499

• src/hg/makeDb/doc/dm6/lastzRuns.txt
  • lines changed 84, context: html, text, full: html, text
    7d5971d28428ab92599a16d80fb8842bca65c7bd Sat May 23 14:47:38 2026 -0700
    dm6 to GCA_000181055.3 (Rhodnius prolixus) lastz/chain/net run for user, refs #37598
• src/hg/makeDb/doc/mm10.txt
  • lines changed 93, context: html, text, full: html, text
    4eb8ce4c1204debcf7cf81f1de5af5a3dd9343d3 Fri May 22 17:27:25 2026 -0700
    The author requested updating the per-tissue colors to gradients. Updated the mouseDevTimecourse legend HTML to match the new colors and documented the data file update in the mm10 and mm39 makedocs. refs #37001
• src/hg/makeDb/doc/mm39/mouseDevTimecourse.txt
  • lines changed 91, context: html, text, full: html, text
    4eb8ce4c1204debcf7cf81f1de5af5a3dd9343d3 Fri May 22 17:27:25 2026 -0700
    The author requested updating the per-tissue colors to gradients. Updated the mouseDevTimecourse legend HTML to match the new colors and documented the data file update in the mm10 and mm39 makedocs. refs #37001
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4Epigenetics.html
  • lines changed 64, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4Epigenetics.ra
  • lines changed 1, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4RnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4TfChip.ra
  • lines changed 1, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/mouse/mm10/encode4RegEpigenetics.html
  • lines changed 50, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/mouse/mm10/encode4RegEpigenetics.ra
  • lines changed 1, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/mouse/mm10/encode4RegRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/mouse/mm10/encode4RegTfChip.ra
  • lines changed 1, context: html, text, full: html, text
    6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700
    ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
• src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra
  • lines changed 4, context: html, text, full: html, text
    c9a1cccc385263cc62a9e3a4af30481fbf8e9158 Sat May 23 15:35:44 2026 -0700
    Per author request, updated the mouseDevTimecourse subtrack longLabels and added the He et al. 2020 Nature paper to the references. refs #37001
• src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.ra
  • lines changed 2, context: html, text, full: html, text
    c9a1cccc385263cc62a9e3a4af30481fbf8e9158 Sat May 23 15:35:44 2026 -0700
    Per author request, updated the mouseDevTimecourse subtrack longLabels and added the He et al. 2020 Nature paper to the references. refs #37001
• src/hg/makeDb/trackDb/mouseDevTimecourseCreditsAndReferences.shared.html
  • lines changed 10, context: html, text, full: html, text
    c9a1cccc385263cc62a9e3a4af30481fbf8e9158 Sat May 23 15:35:44 2026 -0700
    Per author request, updated the mouseDevTimecourse subtrack longLabels and added the He et al. 2020 Nature paper to the references. refs #37001
• src/hg/makeDb/trackDb/mouseDevTimecourseDisplay.shared.html
  • lines changed 26, context: html, text, full: html, text
    4eb8ce4c1204debcf7cf81f1de5af5a3dd9343d3 Fri May 22 17:27:25 2026 -0700
    The author requested updating the per-tissue colors to gradients. Updated the mouseDevTimecourse legend HTML to match the new colors and documented the data file update in the mm10 and mm39 makedocs. refs #37001