Commits for gperez2

v499_preview to v499_preview2 (2026-05-18 to 2026-05-25) v499

6c1fba5815103be1d60cd33c12c30b1ec26f34b7 Wed May 20 14:55:34 2026 -0700

• ENCODE4 Regulation Epigenetics (Indiv.) description page updates (hg38 and mm10): added Available Organs and Tissues table, inline assay colors in Description bullets, dropped color legend paragraph. Also raised maxCheckboxes 40 to 50 on six faceted composite .ra files (Epigenetics, TfChip, RnaSeq for both assemblies). refs #34923
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4Epigenetics.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4Epigenetics.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4RnaSeq.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4TfChip.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode4RegEpigenetics.html - lines changed 50, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode4RegEpigenetics.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode4RegRnaSeq.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode4RegTfChip.ra - lines changed 1, context: html, text, full: html, text

4eb8ce4c1204debcf7cf81f1de5af5a3dd9343d3 Fri May 22 17:27:25 2026 -0700

• The author requested updating the per-tissue colors to gradients. Updated the mouseDevTimecourse legend HTML to match the new colors and documented the data file update in the mm10 and mm39 makedocs. refs #37001
  • src/hg/makeDb/doc/mm10.txt - lines changed 93, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm39/mouseDevTimecourse.txt - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseDevTimecourseDisplay.shared.html - lines changed 26, context: html, text, full: html, text

7d5971d28428ab92599a16d80fb8842bca65c7bd Sat May 23 14:47:38 2026 -0700

• dm6 to GCA_000181055.3 (Rhodnius prolixus) lastz/chain/net run for user, refs #37598
  • src/hg/makeDb/doc/dm6/lastzRuns.txt - lines changed 84, context: html, text, full: html, text

c9a1cccc385263cc62a9e3a4af30481fbf8e9158 Sat May 23 15:35:44 2026 -0700

• Per author request, updated the mouseDevTimecourse subtrack longLabels and added the He et al. 2020 Nature paper to the references. refs #37001
  • src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseDevTimecourseCreditsAndReferences.shared.html - lines changed 10, context: html, text, full: html, text