Commits for mspeir

v500_base to v501_preview (2026-06-29 to 2026-07-06) v501

ba5350e41c26185f48dd56d074219d3a2eab7aed Thu Jul 2 10:32:20 2026 -0700

• New otto framework for G2P track, refs #36736
  • src/hg/utils/otto/g2p/README.md - lines changed 40, context: html, text, full: html, text
  • src/hg/utils/otto/g2p/doG2p.py - lines changed 265, context: html, text, full: html, text
  • src/hg/utils/otto/g2p/expectedColumns.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/utils/otto/g2p/g2p.as - lines changed 35, context: html, text, full: html, text
  • src/hg/utils/otto/g2p/g2pWrapper.sh - lines changed 16, context: html, text, full: html, text

696ce0adb22c81b1df4f2a83efe46a4d987d23c9 Thu Jul 2 14:11:45 2026 -0700

• Updating source tree crontab for G2P run, refs #36736
  • src/hg/utils/otto/otto.crontab - lines changed 4, context: html, text, full: html, text

31b48d9f3e1de4925f46aebd940f46828a5d7af6 Sun Jul 5 11:20:15 2026 -0700

• new page describing autoSql format, refs #37537
  • docs/file-formats/autoSql.md - lines changed 266, context: html, text, full: html, text

01b4de30d4b9c4f44780dee46e1cadb65b23b126 Sun Jul 5 11:26:05 2026 -0700

• Adding link to new AutoSql doc, refs #37537
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 2, context: html, text, full: html, text

815537305c3d65e046b8de189c89622be82d121b Sun Jul 5 11:30:06 2026 -0700

• tweaking AutoSql link label, refs #37537
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 1, context: html, text, full: html, text

da07f42778c2e7fa01915f8bae62e0ff3bc1bbe1 Sun Jul 5 17:52:03 2026 -0700

• Fixing paths for hs1 liftOver track files, refs #36230
  • src/hg/makeDb/trackDb/human/hs1/hgLiftOver.trackDb.ra - lines changed 9, context: html, text, full: html, text