Commits for jnavarr5

a021efbee675889414298c97c15a6103e5f058f9 Tue Sep 15 15:58:19 2026 -0700

Adding a flag for panelApp to ignore the threshold and update the files anyways. Previously was commenting out lines and re-adding them each time once the script finished. No redmine
- src/hg/utils/otto/panelApp/doPanelApp.py - lines changed 18, context: html, text, full: html, text

738e39f7389e853f775cdee73a54087b86dfd31f Wed Sep 16 11:00:35 2026 -0700

Add runtime limits and locking to hubCheckPublicHubs.sh so one hung hubCheck cannot wedge the monthly public hub check: timeout -k 30s 5m per hub, a six hour cap on the whole loop, flock so runs cannot stack, timeout exit codes 124 and 137 logged into the archive, and removal of a stray tail -n +2 that was silently dropping the first hub from every run, refs #38366 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
- src/utils/qa/hubCheckPublicHubs.sh - lines changed 55, context: html, text, full: html, text

af9b41f1305c39290da8b597f232ac0a19dda0a9 Fri Sep 18 14:53:06 2026 -0700

Reformatting both episignatures mouseOvers to bold label then value, adding the OMIM number back to the EpigenCentral mouseOver, and raising maxWindowCoverage from 200000 to 10000000 on both subtracks so multi-megabase views draw as items rather than the coverage graph, with the makedoc visibility paragraph updated to match, refs #38112 #38371 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
- src/hg/makeDb/doc/hg38/episignatures.txt - lines changed 12, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/episignatures.ra - lines changed 4, context: html, text, full: html, text

78ce99c531fbd268466313d5b7ac1c7ba80defe1 Fri Sep 18 17:22:34 2026 -0700

Updating a claude complaint about the makedoc since we updated the labels, refs #38308
- src/hg/makeDb/doc/mm10/mouseStrainsCactus.txt - lines changed 1, context: html, text, full: html, text