Commits for gperez2

v479_preview to v479_preview2 (2025-03-03 to 2025-03-10) v479

9ecc6203f2b73b1ca98cb711b5e770577385b21a Wed Feb 26 16:36:31 2025 -0800

• Updating the mitoMap description page, refs #24849
  • src/hg/makeDb/trackDb/human/mitoMap.html - lines changed 117, context: html, text, full: html, text

409c64a1121ee70c37a7e5178cf42320d683fdc2 Fri Feb 28 14:47:15 2025 -0800

• Updating example due to a bug with the '+', refs #17555
  • src/hg/htdocs/goldenPath/help/hgGenomeHelp.html - lines changed 10, context: html, text, full: html, text

77d8e74cbe26eadaf46c1ca3230f4d0bc59977cc Mon Mar 3 14:18:27 2025 -0800

• Adding chromosomes chrM,chrMT trackDb setting and note about MITOMAP data is available for chrM on hg38 and chrMT on hg19, refs #24849
  • src/hg/makeDb/trackDb/human/mitoMap.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mitoMap.ra - lines changed 1, context: html, text, full: html, text

e581e5a00da4cf4433b462a1f48f68a411861a08 Tue Mar 4 15:31:58 2025 -0800

• Adding AbSplice and SpliceAI details to the spliceImpactSuper description page, refs #34823
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.html - lines changed 189, context: html, text, full: html, text

c0e990a37bac39f6d5c8d22512d6232d299050fd Wed Mar 5 10:39:28 2025 -0800

• Announcing the release of the Splicing Impact super track and the SpliceVarDB track, refs #34823
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 38, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.alpha.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/splicevardb.ra - lines changed 1, context: html, text, full: html, text

9308f97c7196e75b52869594a794198865947c1f Wed Mar 5 11:12:24 2025 -0800

• Adding image for the Splicing Impact and SpliceVarDB track announcement, refs #34823
  • src/hg/htdocs/images/newsArchImages/SpliceVarDB.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800

• Removing release tags for the Splicing Impact super track, refs #34823
  • src/hg/makeDb/trackDb/human/abSplice.alpha.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/abSplice.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.alpha.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.alpha.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 6, context: html, text, full: html, text

21396a5cf38d93981f29215f391ffe421ef0cdb1 Wed Mar 5 11:54:03 2025 -0800

• Updating the SpliceVarDB track URL in the newsarch.html, refs #34823
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

0ccef37cf87b5f08c05959db43e48c8d91fba4db Thu Mar 6 12:37:07 2025 -0800

• Adding docker page links to help pages, refs #34915
  • src/hg/htdocs/goldenPath/help/gbic.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/mirror.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/training/index.html - lines changed 3, context: html, text, full: html, text

998f09b6da06e82ac416122c08aa2ec32694b409 Thu Mar 6 14:27:46 2025 -0800

• Announcing the release of the MITOMAP track, refs #24849
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 44, context: html, text, full: html, text
  • src/hg/htdocs/images/newsArchImages/mitoMap_MT_TL1.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mitoMap.ra - lines changed 1, context: html, text, full: html, text

bb787f680e151b54e5f3580272d295d7c1b549b3 Thu Mar 6 15:02:12 2025 -0800

• Updating the MITOMAP newsarch.html, refs #24849
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 6, context: html, text, full: html, text