Commits for max

v1.2.14 to HEAD (2025-04-14 to 2025-05-22) review

b5842dc0410ffc8f3e6cfb47581794a0069cd13f Fri Apr 18 15:52:46 2025 -0700

• adding PrepSCTFindMarkers(obj) to seurat script for findallmarkers()
  • src/cbPyLib/cellbrowser/R/cellbrowser.R - lines changed 1, context: html, text, full: html, text

720897aef07b1a4b0848208089f4c78c357ad34d Thu Apr 24 12:47:05 2025 -0700

• fixing typo, thanks to Brittney
  • src/cbPyLib/cellbrowser/R/cellbrowser.R - lines changed 1, context: html, text, full: html, text

313baa3b50d69313c474b406f50f8fd0aa197b21 Fri Apr 25 08:40:28 2025 -0700

• dont run PrepSCTFindMarkers() if not an SCT object
  • src/cbPyLib/cellbrowser/R/cellbrowser.R - lines changed 3, context: html, text, full: html, text

88adb3f4a121ba595b63aba89b57261e52e66c4d Fri May 2 08:17:38 2025 -0700

• adding quickgenes to cbImportSeurat
  • src/cbPyLib/cellbrowser/seurat.py - lines changed 12, context: html, text, full: html, text

ac5e0368afd7194ec70c38fcc5c890dbc735ca40 Fri May 2 08:17:46 2025 -0700

• Merge branch 'develop' of github.com:ucscGenomeBrowser/cellBrowser into develop

fee658e200a700b6ff336bcb5d449892021e5708 Fri May 2 10:08:38 2025 -0700

• adding one more drawing stage so when plotting gene expression zero values will not interfere with non zero values
  • src/cbPyLib/cellbrowser/cbWeb/js/maxPlot.js - lines changed 60, context: html, text, full: html, text

88e440f6e7e7739f90684ffc6129aeb1b7961285 Tue May 6 06:29:41 2025 -0700

• creating quickgenes file for cbImportSeurat
  • src/cbPyLib/cellbrowser/seurat.py - lines changed 7, context: html, text, full: html, text

7df99a27a400ec5627663c3a0692e9ab7d04796c Fri May 9 09:25:54 2025 -0700

• fix: null on recent genes, split screen titles, scroll bar coming up without reason, zooming on split screen, checkbox on both sides updating on change event, hide checkbox when not in split screen mode
  • src/cbPyLib/cellbrowser/cbWeb/css/cellBrowser.css - lines changed 1, context: html, text, full: html, text
  • src/cbPyLib/cellbrowser/cbWeb/js/cellBrowser.js - lines changed 33, context: html, text, full: html, text
  • src/cbPyLib/cellbrowser/cbWeb/js/maxPlot.js - lines changed 3, context: html, text, full: html, text

294c36492d0ae4bac9ae450eade47fe33c4860d8 Fri May 16 09:22:07 2025 -0700

• improving error message when gene is not found in matrix
  • src/cbPyLib/cellbrowser/cbWeb/js/cellBrowser.js - lines changed 3, context: html, text, full: html, text

67cb546ae004d876b50e6959aef4d6dcf1e3bff0 Fri May 16 10:01:03 2025 -0700

• fixing width of buttons
  • src/cbPyLib/cellbrowser/cbWeb/css/cellBrowser.css - lines changed 4, context: html, text, full: html, text
  • src/cbPyLib/cellbrowser/cbWeb/js/cellBrowser.js - lines changed 14, context: html, text, full: html, text

cbc5e17ce713a7076a9f95991e10262079780cc8 Fri May 16 10:27:58 2025 -0700

• overload -c to skip internal markers
  • src/cbPyLib/cellbrowser/R/cellbrowser.R - lines changed 11, context: html, text, full: html, text
  • src/cbPyLib/cellbrowser/seurat.py - lines changed 2, context: html, text, full: html, text

7c04a101e90c131afccf4d973d2e76da384543b8 Fri May 16 11:11:00 2025 -0700

• do not stop on invalid genes in quickgenes file. skip invalid genes in marker file
  • src/cbPyLib/cellbrowser/cellbrowser.py - lines changed 35, context: html, text, full: html, text