File Changes for braney

v246_preview to v246_preview2 (2011-01-11 to 2011-01-18) v246

• src/hg/encode/autoSql/bedLogR.as
  • lines changed 14, context: html, text, full: html, text
    for HAIB CNV data
• src/hg/encode/autoSql/bedLogR.sql
  • lines changed 22, context: html, text, full: html, text
    for HAIB CNV data
• src/hg/encode/encodeValidate/config/labs.ra
  • lines changed 3, context: html, text, full: html, text
    add Ruan lab
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    add bedLogR
  • lines changed 1, context: html, text, full: html, text
    put file name in quotes so it can have special characters in it
• src/hg/encode/inc/bedLogR.h
  • lines changed 70, context: html, text, full: html, text
    for HAIB CNV data
• src/hg/encode/lib/bedLogR.c
  • lines changed 166, context: html, text, full: html, text
    for HAIB CNV data
• src/hg/genePredToGtf/makefile
  • lines changed 2, context: html, text, full: html, text
    need to have DESTDIR in there
• src/hg/inc/wgEncodeGencodeExonSupport.h
  • lines changed 62, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodeGeneSymbol.h
  • lines changed 62, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodePdb.h
  • lines changed 62, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodePubmed.h
  • lines changed 62, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodeRefSeq.h
  • lines changed 63, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodeSource.h
  • lines changed 68, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodeTranscriptSupport.h
  • lines changed 62, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/inc/wgEncodeGencodeUniProt.h
  • lines changed 62, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeExonSupport.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeExonSupport.c
  • lines changed 124, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeExonSupport.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeGeneSymbol.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeGeneSymbol.c
  • lines changed 124, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeGeneSymbol.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodePdb.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodePdb.c
  • lines changed 124, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodePdb.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodePubmed.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodePubmed.c
  • lines changed 124, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodePubmed.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeRefSeq.as
  • lines changed 7, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeRefSeq.c
  • lines changed 132, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeRefSeq.sql
  • lines changed 13, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeSource.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeSource.c
  • lines changed 127, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeSource.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.c
  • lines changed 124, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeUniProt.as
  • lines changed 6, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeUniProt.c
  • lines changed 124, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/encode/wgEncodeGencodeUniProt.sql
  • lines changed 12, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/lib/makefile
  • lines changed 4, context: html, text, full: html, text
    gencode metadata autoSql
• src/hg/makeDb/trackDb/buildTrix
  • lines changed 1, context: html, text, full: html, text
    make tmp files easier to track
  • lines changed 5, context: html, text, full: html, text
    fix the "leaving tmp files around" problem
• src/makefile
  • lines changed 4, context: html, text, full: html, text
    fix up some misunderstanding about where the gtf utilities live
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v246 preview2