Commits for braney

v246_preview to v246_preview2 (2011-01-11 to 2011-01-18) v246

• add bedLogR
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
• for HAIB CNV data
  • src/hg/encode/autoSql/bedLogR.as - lines changed 14, context: html, text, full: html, text
  • src/hg/encode/autoSql/bedLogR.sql - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/inc/bedLogR.h - lines changed 70, context: html, text, full: html, text
  • src/hg/encode/lib/bedLogR.c - lines changed 166, context: html, text, full: html, text
• gencode metadata autoSql
  • src/hg/inc/wgEncodeGencodeExonSupport.h - lines changed 62, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodeGeneSymbol.h - lines changed 62, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodePdb.h - lines changed 62, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodePubmed.h - lines changed 62, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodeRefSeq.h - lines changed 63, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodeSource.h - lines changed 68, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodeTranscriptSupport.h - lines changed 62, context: html, text, full: html, text
  • src/hg/inc/wgEncodeGencodeUniProt.h - lines changed 62, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeExonSupport.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeExonSupport.c - lines changed 124, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeExonSupport.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeGeneSymbol.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeGeneSymbol.c - lines changed 124, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeGeneSymbol.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePdb.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePdb.c - lines changed 124, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePdb.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePubmed.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePubmed.c - lines changed 124, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePubmed.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeRefSeq.as - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeRefSeq.c - lines changed 132, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeRefSeq.sql - lines changed 13, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeSource.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeSource.c - lines changed 127, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeSource.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.c - lines changed 124, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeUniProt.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeUniProt.c - lines changed 124, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodeUniProt.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 4, context: html, text, full: html, text
• need to have DESTDIR in there
  • src/hg/genePredToGtf/makefile - lines changed 2, context: html, text, full: html, text
• fix up some misunderstanding about where the gtf utilities live
  • src/makefile - lines changed 4, context: html, text, full: html, text
• make tmp files easier to track
  • src/hg/makeDb/trackDb/buildTrix - lines changed 1, context: html, text, full: html, text
• fix the "leaving tmp files around" problem
  • src/hg/makeDb/trackDb/buildTrix - lines changed 5, context: html, text, full: html, text
• put file name in quotes so it can have special characters in it
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
• add Ruan lab
  • src/hg/encode/encodeValidate/config/labs.ra - lines changed 3, context: html, text, full: html, text
• v246 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text