File Changes for angie

v247_preview to v247_preview2 (2011-02-01 to 2011-02-08) v247

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 49, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added coloring by allele frequency:items are shaded on a scale of red (rare) to blue (common), or black when no frequencies were given. Now I'm wondering if I should have used a log scale, but this works so I'm checking it in.
  • lines changed 157, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added filtering by allele frequency:min/max minor allele freq and min chromosome sample count (2N).
• src/hg/hgTracks/gvfTrack.c
  • lines changed 4, context: html, text, full: html, text
    Track #34 (dbVar for human): Color switch agreed on by NCBI, DGV andother parties: Gain is now blue, Loss is now red.
• src/hg/hgTracks/variation.c
  • lines changed 133, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added coloring by allele frequency:items are shaded on a scale of red (rare) to blue (common), or black when no frequencies were given. Now I'm wondering if I should have used a log scale, but this works so I'm checking it in.
  • lines changed 64, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added filtering by allele frequency:min/max minor allele freq and min chromosome sample count (2N).
• src/hg/hgTracks/variation.h
  • lines changed 43, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added coloring by allele frequency:items are shaded on a scale of red (rare) to blue (common), or black when no frequencies were given. Now I'm wondering if I should have used a log scale, but this works so I'm checking it in.
• src/hg/hgc/gvfClick.c
  • lines changed 40, context: html, text, full: html, text
    Track #34 (dbVar for human): Nicer display of Start_range and End_range attributes.
• src/hg/inc/snp125Ui.h
  • lines changed 8, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added coloring by allele frequency:items are shaded on a scale of red (rare) to blue (common), or black when no frequencies were given. Now I'm wondering if I should have used a log scale, but this works so I'm checking it in.
  • lines changed 3, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added filtering by allele frequency:min/max minor allele freq and min chromosome sample count (2N).
• src/hg/lib/snp125Ui.c
  • lines changed 40, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added coloring by allele frequency:items are shaded on a scale of red (rare) to blue (common), or black when no frequencies were given. Now I'm wondering if I should have used a log scale, but this works so I'm checking it in.
• src/hg/makeDb/doc/hg18.txt
  • lines changed 4, context: html, text, full: html, text
    Track #1656 (GWAS Catalog): monthly data update on hgwdev.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 3, context: html, text, full: html, text
    Track #1656 (GWAS Catalog): monthly data update on hgwdev.
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): adding yet another setting necessaryfor subset tracks.
• src/hg/snp/hapmapLd/hapmapNewPhasedToOld.pl
  • lines changed 77, context: html, text, full: html, text
    Track #2648 (HapMap LD Phased): script to translate HapMap's newphased genotype format (ftp://ftp.ncbi.nlm.nih.gov/hapmap/phasing/2009-02_phaseIII/) into the older format recognized by Haploview (ftp://ftp.ncbi.nlm.nih.gov/hapmap/phasing/2007-08_rel22/).