File Changes for kent

v249_preview2 to v249_base (2011-03-22 to 2011-03-29) v249

• src/hg/hgc/peakClusters.c
  • lines changed 26, context: html, text, full: html, text
    Adding link to antibody page for factor in TFBS details. Adding cell letter abbreviation column.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 90, context: html, text, full: html, text
    Putting in instructions for making pooled & normalized Caltech RNA signals.
• src/hg/regulate/regClusterTreeCells/regClusterTreeCells.c
  • lines changed 1, context: html, text, full: html, text
    Improving usage message.
• src/hg/regulate/regStartSampleEmbl/annotate.embl
  • lines changed 1512, context: html, text, full: html, text
    Saving file with hand annotations of genes in source tree.
• src/hg/utils/bedWeedOverlapping/bedWeedOverlapping.c
  • lines changed 1, context: html, text, full: html, text
    Fixing memory leak in bedWeedOverlapping.
• src/inc/basicBed.h
  • lines changed 4, context: html, text, full: html, text
    Adding utility to calculate average bigWig value for a bed file.
• src/lib/basicBed.c
  • lines changed 30, context: html, text, full: html, text
    Adding utility to calculate average bigWig value for a bed file.
• src/utils/bedGeneParts/bedGeneParts.c
  • lines changed 156, context: html, text, full: html, text
    Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
• src/utils/bedGeneParts/firstExon.expected
  • lines changed 9, context: html, text, full: html, text
    Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
• src/utils/bedGeneParts/introns.expected
  • lines changed 7, context: html, text, full: html, text
    Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
• src/utils/bedGeneParts/makefile
  • lines changed 26, context: html, text, full: html, text
    Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
• src/utils/bedGeneParts/promoter.expected
  • lines changed 9, context: html, text, full: html, text
    Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
• src/utils/bigWigAverageOverBed/bigWigAverageOverBed.c
  • lines changed 282, context: html, text, full: html, text
    Adding utility to calculate average bigWig value for a bed file.
• src/utils/bigWigAverageOverBed/makefile
  • lines changed 18, context: html, text, full: html, text
    Adding utility to calculate average bigWig value for a bed file.
• src/utils/bigWigMerge/bigWigMerge.c
  • lines changed 226, context: html, text, full: html, text
    Big wig merge utility seems to work.
  • lines changed 56, context: html, text, full: html, text
    Adding utility to calculate average bigWig value for a bed file.
• src/utils/bigWigMerge/makefile
  • lines changed 18, context: html, text, full: html, text
    Big wig merge utility seems to work.
• src/utils/colTransform/colTransform.c
  • lines changed 61, context: html, text, full: html, text
    Utility to add or multiply a column of a tab or space separated file by a constant seems to work.
• src/utils/colTransform/makefile
  • lines changed 18, context: html, text, full: html, text
    Utility to add or multiply a column of a tab or space separated file by a constant seems to work.