Commits for kent

v249_preview2 to v249_base (2011-03-22 to 2011-03-29) v249

• Adding link to antibody page for factor in TFBS details. Adding cell letter abbreviation column.
  • src/hg/hgc/peakClusters.c - lines changed 26, context: html, text, full: html, text
• Big wig merge utility seems to work.
  • src/utils/bigWigMerge/bigWigMerge.c - lines changed 226, context: html, text, full: html, text
  • src/utils/bigWigMerge/makefile - lines changed 18, context: html, text, full: html, text
• Adding utility to calculate average bigWig value for a bed file.
  • src/inc/basicBed.h - lines changed 4, context: html, text, full: html, text
  • src/lib/basicBed.c - lines changed 30, context: html, text, full: html, text
  • src/utils/bigWigAverageOverBed/bigWigAverageOverBed.c - lines changed 282, context: html, text, full: html, text
  • src/utils/bigWigAverageOverBed/makefile - lines changed 18, context: html, text, full: html, text
  • src/utils/bigWigMerge/bigWigMerge.c - lines changed 56, context: html, text, full: html, text
• Utility to add or multiply a column of a tab or space separated file by a constant seems to work.
  • src/utils/colTransform/colTransform.c - lines changed 61, context: html, text, full: html, text
  • src/utils/colTransform/makefile - lines changed 18, context: html, text, full: html, text
• Saving file with hand annotations of genes in source tree.
  • src/hg/regulate/regStartSampleEmbl/annotate.embl - lines changed 1512, context: html, text, full: html, text
• Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
  • src/utils/bedGeneParts/bedGeneParts.c - lines changed 156, context: html, text, full: html, text
  • src/utils/bedGeneParts/firstExon.expected - lines changed 9, context: html, text, full: html, text
  • src/utils/bedGeneParts/introns.expected - lines changed 7, context: html, text, full: html, text
  • src/utils/bedGeneParts/makefile - lines changed 26, context: html, text, full: html, text
  • src/utils/bedGeneParts/promoter.expected - lines changed 9, context: html, text, full: html, text
• Fixing memory leak in bedWeedOverlapping.
  • src/hg/utils/bedWeedOverlapping/bedWeedOverlapping.c - lines changed 1, context: html, text, full: html, text
• Improving usage message.
  • src/hg/regulate/regClusterTreeCells/regClusterTreeCells.c - lines changed 1, context: html, text, full: html, text
• Putting in instructions for making pooled & normalized Caltech RNA signals.
  • src/hg/makeDb/doc/hg19.txt - lines changed 90, context: html, text, full: html, text