File Changes for hiram

v250_base to v251_preview (2011-04-19 to 2011-04-26) v251

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 21, context: html, text, full: html, text
    add specific Ensembl gene version string in longLabel for hgTracks and hgTrackUi
• src/hg/hgTracks/hgTracks.c
  • lines changed 6, context: html, text, full: html, text
    anoCar2 works for Ensembl due to ucscToEnsembl table
  • lines changed 1, context: html, text, full: html, text
    calJac3 also now has a ucscToEnsembl table, this needs to be a trackDb variable ...
  • lines changed 4, context: html, text, full: html, text
    oryCun2 now has a proper ucscToEnsembl translation table
  • lines changed 22, context: html, text, full: html, text
    add specific Ensembl gene version string in longLabel for hgTracks and hgTrackUi
• src/hg/hgTracks/simpleTracks.c
  • lines changed 19, context: html, text, full: html, text
    add specific Ensembl gene version string in longLabel for hgTracks and hgTrackUi
• src/hg/inc/ensFace.h
  • lines changed 4, context: html, text, full: html, text
    add specific Ensembl gene version string in longLabel for hgTracks and hgTrackUi
• src/hg/lib/ensFace.c
  • lines changed 25, context: html, text, full: html, text
    add specific Ensembl gene version string in longLabel for hgTracks and hgTrackUi
• src/hg/makeDb/doc/anoCar1.txt
  • lines changed 25, context: html, text, full: html, text
    constructed liftOver from anoCar1 to anoCar2
• src/hg/makeDb/doc/anoCar2.txt
  • lines changed 73, context: html, text, full: html, text
    in the pushQ and now with Ensembl v61 genes
  • lines changed 18, context: html, text, full: html, text
    adding hg19 human lastz chain net
  • lines changed 36, context: html, text, full: html, text
    added blat servers and set default positon and ensGene v62 done
  • lines changed 6, context: html, text, full: html, text
    setting current for dateReference v62 trackVersion for ensGenes
  • lines changed 57, context: html, text, full: html, text
    starting lastz runs with Lizard anoCar2
• src/hg/makeDb/doc/calJac3.txt
  • lines changed 53, context: html, text, full: html, text
    add the ucscToEnsembl table
  • lines changed 33, context: html, text, full: html, text
    adding ensGene v62
• src/hg/makeDb/doc/galGal3.txt
  • lines changed 57, context: html, text, full: html, text
    starting lastz runs with Lizard anoCar2
• src/hg/makeDb/doc/hg19.txt
  • lines changed 57, context: html, text, full: html, text
    adding lastz anoCar2
  • lines changed 56, context: html, text, full: html, text
    patch3 naming business on hg19 and adding ensGene v62
  • lines changed 1, context: html, text, full: html, text
    starting lastz runs with Lizard anoCar2
• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 24, context: html, text, full: html, text
    adding anoCar2 v61 genes
  • lines changed 1097, context: html, text, full: html, text
    update v62 documented
  • lines changed 34, context: html, text, full: html, text
    patch3 naming business on hg19 and adding ensGene v62
• src/hg/makeDb/doc/mm9.txt
  • lines changed 55, context: html, text, full: html, text
    starting lastz runs with Lizard anoCar2
• src/hg/makeDb/doc/nomLeu1.txt
  • lines changed 20, context: html, text, full: html, text
    adding ensGene v62
  • lines changed 3, context: html, text, full: html, text
    setting current for dateReference v62 trackVersion for ensGenes
• src/hg/makeDb/doc/oryCun2.txt
  • lines changed 103, context: html, text, full: html, text
    adding ensGene v62 and ucscToEnsembl name translation table
• src/hg/makeDb/doc/panTro3.txt
  • lines changed 25, context: html, text, full: html, text
    clean up some comments on 12way bigWig processing
• src/hg/makeDb/trackDb/lizard/anoCar2/description.html
  • lines changed 16, context: html, text, full: html, text
    update assembly details
  • lines changed 2, context: html, text, full: html, text
    add comment about microchromosomes
• src/hg/utils/automation/EnsGeneAutomate.pm
  • lines changed 173, context: html, text, full: html, text
    adding v62 definitions
  • lines changed 1, context: html, text, full: html, text
    fix incorrect name for ensGeneFtpMySqlFileNames_62