Commits for hiram
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v250_base to v251_preview (2011-04-19 to 2011-04-26) v251
- update assembly details
- src/hg/makeDb/trackDb/lizard/anoCar2/description.html - lines changed 16, context: html, text, full: html, text
- adding anoCar2 v61 genes
- src/hg/makeDb/doc/makeEnsembl.txt - lines changed 24, context: html, text, full: html, text
- anoCar2 works for Ensembl due to ucscToEnsembl table
- src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
- in the pushQ and now with Ensembl v61 genes
- src/hg/makeDb/doc/anoCar2.txt - lines changed 73, context: html, text, full: html, text
- adding v62 definitions
- src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 173, context: html, text, full: html, text
- clean up some comments on 12way bigWig processing
- src/hg/makeDb/doc/panTro3.txt - lines changed 25, context: html, text, full: html, text
- adding lastz anoCar2
- src/hg/makeDb/doc/hg19.txt - lines changed 57, context: html, text, full: html, text
- adding hg19 human lastz chain net
- src/hg/makeDb/doc/anoCar2.txt - lines changed 18, context: html, text, full: html, text
- adding ensGene v62
- src/hg/makeDb/doc/nomLeu1.txt - lines changed 20, context: html, text, full: html, text
- fix incorrect name for ensGeneFtpMySqlFileNames_62
- src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 1, context: html, text, full: html, text
- added blat servers and set default positon and ensGene v62 done
- src/hg/makeDb/doc/anoCar2.txt - lines changed 36, context: html, text, full: html, text
- setting current for dateReference v62 trackVersion for ensGenes
- src/hg/makeDb/doc/anoCar2.txt - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/doc/nomLeu1.txt - lines changed 3, context: html, text, full: html, text
- add comment about microchromosomes
- src/hg/makeDb/trackDb/lizard/anoCar2/description.html - lines changed 2, context: html, text, full: html, text
- calJac3 also now has a ucscToEnsembl table, this needs to be a trackDb variable ...
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
- add the ucscToEnsembl table
- src/hg/makeDb/doc/calJac3.txt - lines changed 53, context: html, text, full: html, text
- update v62 documented
- src/hg/makeDb/doc/makeEnsembl.txt - lines changed 1097, context: html, text, full: html, text
- adding ensGene v62
- src/hg/makeDb/doc/calJac3.txt - lines changed 33, context: html, text, full: html, text
- adding ensGene v62 and ucscToEnsembl name translation table
- src/hg/makeDb/doc/oryCun2.txt - lines changed 103, context: html, text, full: html, text
- oryCun2 now has a proper ucscToEnsembl translation table
- src/hg/hgTracks/hgTracks.c - lines changed 4, context: html, text, full: html, text
- constructed liftOver from anoCar1 to anoCar2
- src/hg/makeDb/doc/anoCar1.txt - lines changed 25, context: html, text, full: html, text
- patch3 naming business on hg19 and adding ensGene v62
- src/hg/makeDb/doc/hg19.txt - lines changed 56, context: html, text, full: html, text
- src/hg/makeDb/doc/makeEnsembl.txt - lines changed 34, context: html, text, full: html, text
- add specific Ensembl gene version string in longLabel for hgTracks and hgTrackUi
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 21, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 22, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 19, context: html, text, full: html, text
- starting lastz runs with Lizard anoCar2
- src/hg/makeDb/doc/anoCar2.txt - lines changed 57, context: html, text, full: html, text
- src/hg/makeDb/doc/galGal3.txt - lines changed 57, context: html, text, full: html, text
- src/hg/makeDb/doc/hg19.txt - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/mm9.txt - lines changed 55, context: html, text, full: html, text
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