Commits for chinhli

v257_base to v258_preview (2011-09-19 to 2011-09-27) v258

• initial geneReviews aork
  • src/hg/hgc/hgc.c - lines changed 60, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 9, context: html, text, full: html, text
• Add geneReviews pointer to refSeq genes.
  • src/hg/hgc/hgc.c - lines changed 39, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 3, context: html, text, full: html, text
• Finished add GeneReview GRShort links to refSeq gene's detail page.
  • src/hg/hgc/hgc.c - lines changed 32, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 4, context: html, text, full: html, text
• hgGene, hgc, section.ra change for phase 2 of geneReviews track
  • src/hg/hgGene/hgGene.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.h - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/section.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGene/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 2, context: html, text, full: html, text
• hgGene, hgc, section.ra change for phase 2 of geneReviews track
  • src/hg/hgGene/geneReviews.c - lines changed 53, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Finished GeneReviews for UCSC knownGenes (hg19)
  • src/hg/hgGene/geneReviews.c - lines changed 52, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 2, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Finished geneReviews for OMIM genes
  • src/hg/hgGene/geneReviews.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 29, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 1, context: html, text, full: html, text
• To resolve merge conflict
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 11, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Merge branch 'master' into geneReviews
• tint polish on geneReviews detail print out
  • src/hg/hgc/hgc.c - lines changed 6, context: html, text, full: html, text
• Use green for geneReviews item
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Merge branch 'master' into geneReviews
• Merge branch 'master' into geneReviews
• Use wiki bigBed file trick to do automatic geneReviews update for hg19
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 11, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Merge branch 'master' into geneReviews
  • src/hg/hgc/hgc.c - lines changed 18, context: html, text, full: html, text
• Finished up the bigBed update approach for geneReviews track
  • src/hg/hgGene/geneReviews.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 52, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 4, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Complete switch over to use bigBed trick
  • src/hg/hgc/hgc.c - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text
• Add geneReview track using database table approach
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 11, context: html, text, full: html, text
• Disable geneReview track using database table approach
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 10, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Finished geneReviews for hg19 and hg18
  • src/hg/hgc/hgc.c - lines changed 70, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/geneReviewsBB.sql - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/geneReviewsBed5.as - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/geneReviewsRefGene.sql - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg18.txt - lines changed 74, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 165, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/geneReviews.html - lines changed 46, context: html, text, full: html, text
  • src/utils/geneReviews/addGeneReviewToBed.pl - lines changed 53, context: html, text, full: html, text
• Merge branch 'master' into geneReviews
• Merge branch 'master' into geneReviews
• move geneReviews track into group phenDis from group X
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text
• minor touch up
  • src/hg/makeDb/trackDb/human/geneReviews.html - lines changed 18, context: html, text, full: html, text