File Changes for wong
switch to commits view, user indexv263_base to v264_preview (2012-02-14 to 2012-02-21) v264
- python/lib/ucscgenomics/mkChangeNotes.py
- lines changed 1, context: html, text, full: html, text
forgot to also remove revoked tables from the change table status set, possibly need to remove attic, but i'll do it if the problem comes up
- lines changed 17, context: html, text, full: html, text
changed the reporting of changed tables state to be a critical error
- src/hg/encode/encodeMkFilesList/encodeMkFilesList
- lines changed 2, context: html, text, full: html, text
the threading of the md5sums was causing problems with the database objects not being able to be clones, so i dosconnect fom the database, then reconnect after making the md5sums
- lines changed 70, context: html, text, full: html, text
changed the gzip md5sum function to check internally for the contents, but report the external md5sum to the metaDb
- src/hg/encode/encodeQaCheckHgdownloadFiles/encodeQaCheckHgdownloadFiles
- lines changed 2, context: html, text, full: html, text
changed it to show the server and foldername onthe same line
- src/hg/encode/encodeQaInit/encodeQaInit
- lines changed 10, context: html, text, full: html, text
changed it to complain and die upon subId setting to reviewing failure
- src/hg/encode/qaAddTrackReferences/makefile
- lines changed 28, context: html, text, full: html, text
first draft of qaAddTrackReferences
- src/hg/encode/qaAddTrackReferences/qaAddTrackReferences
- lines changed 423, context: html, text, full: html, text
first draft of qaAddTrackReferences
- lines changed 60, context: html, text, full: html, text
removed unnecessary lines
- lines changed 17, context: html, text, full: html, text
changed how collective name is put in the author list. It's always put at the front now.
- src/hg/encode/qaEncodeTracks2/qaEncodeTracks
- lines changed 8, context: html, text, full: html, text
uncomment parser line, and reomved Test \d: from test names
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release2.notes
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release3.notes
- lines changed 30, context: html, text, full: html, text
corrected notes, last time was premature
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 16, context: html, text, full: html, text
added in provisional views for haib Bisulfite
- lines changed 16, context: html, text, full: html, text
removing temporary provisional views
- lines changed 1, context: html, text, full: html, text
changing tag to conform to norm
- lines changed 95, context: html, text, full: html, text
added in antibody target to the decsription field (Willy)
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
- lines changed 687, context: html, text, full: html, text
correcting for the gzip bug error in mkFilesList
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
- lines changed 145, context: html, text, full: html, text
more internal gzip bug fixes
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibBisulfate.ra
- lines changed 115, context: html, text, full: html, text
added in provisional views for haib Bisulfite
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
- lines changed 21, context: html, text, full: html, text
expIds and accessions for rna seq
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
- lines changed 9, context: html, text, full: html, text
some merge problem needs this
- lines changed 21, context: html, text, full: html, text
renaming some files before they are released
- lines changed 9, context: html, text, full: html, text
reverted a metaDB change, becuase hte objects already went out in release 1
- lines changed 191, context: html, text, full: html, text
renamed objects to now have antibody vendor id
- lines changed 183, context: html, text, full: html, text
added in FoxM1 experiment
- lines changed 1076, context: html, text, full: html, text
more internal gzip bug fixes
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
- lines changed 113, context: html, text, full: html, text
md5sums for open chrom dnase
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
- lines changed 98, context: html, text, full: html, text
correcting for the gzip bug error in mkFilesList
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
- lines changed 271, context: html, text, full: html, text
expIds and other mdb fixes
- lines changed 3, context: html, text, full: html, text
more metadata corrections
- lines changed 627, context: html, text, full: html, text
fixed internal gzip md5sum
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
- lines changed 409, context: html, text, full: html, text
more internal gzip bug fixes
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 2, context: html, text, full: html, text
added in the rest of the bisulfate test track
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.html
- lines changed 125, context: html, text, full: html, text
added in the rest of the bisulfate test track
- lines changed 74, context: html, text, full: html, text
flo's version of haib bisulfate
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.ra
- lines changed 84, context: html, text, full: html, text
added in the rest of the bisulfate test track
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
- lines changed 41, context: html, text, full: html, text
pre=qa fixes and reformed references
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
changed view limit according to lab
- lines changed 47, context: html, text, full: html, text
changed short labels according to lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra
- lines changed 8, context: html, text, full: html, text
renaming some files before they are released
- lines changed 64, context: html, text, full: html, text
renamed objects to now have antibody vendor id
- lines changed 45, context: html, text, full: html, text
added in FoxM1 experiment
- lines changed 1, context: html, text, full: html, text
changed filter to all for treatment
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html
- lines changed 17, context: html, text, full: html, text
fixed html and order of cells in list
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra
- lines changed 42, context: html, text, full: html, text
I have no idea how that one got commented out
- lines changed 1, context: html, text, full: html, text
fixed html and order of cells in list
- lines changed 1, context: html, text, full: html, text
this time for real on alphabetize
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html
- src/hg/utils/automation/HgDb.pm
- lines changed 1, context: html, text, full: html, text
removed line that was left from debugging
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